Pairwise Alignments

Query, 818 a.a., Type I site-specific restriction-modification system, R (restriction) subunit and related helicases from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1070 a.a., type I restriction enzyme R subunit from Paraburkholderia graminis OAS925

 Score =  160 bits (406), Expect = 3e-43
 Identities = 175/607 (28%), Positives = 259/607 (42%), Gaps = 98/607 (16%)

Query: 3   DKKTLSERDICTKFITPAIEKAGWDKTTQLLEEVSFTDGKIYVRGRLTARGKRKRADYIL 62
           D    SE +    FI   +++AGW             D ++ V G    +G  K  DY+L
Sbjct: 139 DTHDYSEAETRRAFIDLMLKEAGWTLDPA-------KDHEVVVTGMPNNQGVGK-VDYVL 190

Query: 63  YYKPNIPIAIVEAKDNRHSVRAGLQQALDYAEILDI-----PCVFSSNG-DGFVFHD--- 113
           +     P+A++EAK    S   G QQA  YA+ L+      P +F SNG + +++ D   
Sbjct: 191 WADDGKPLALIEAKRTTKSPLEGEQQAKLYADCLEKKHGQRPVIFLSNGYENWIWDDQSY 250

Query: 114 -RTATDG---NIETELDIDSFPSPEELLKKYKQYKGIHTSEAQEVALQDYYFDGSGRSPR 169
            R A  G     E EL I    S ++L +     + +                      R
Sbjct: 251 PRRALQGFYKKSELELVIQRRTSRKKLAEAVIDTRIVE---------------------R 289

Query: 170 YYQQIAVNRTVEAV-ANGQGRILLVMATGTGKTYTAFQIIHRLWKSRAKKRILFLADRTA 228
           +YQ  A+ R  E      Q + LLVMATGTGKT T   +   L +    KRILFLADR A
Sbjct: 290 FYQTRAIRRVGETFEVENQRKALLVMATGTGKTRTVIALADVLMRCNWAKRILFLADRVA 349

Query: 229 LIDQTRRGDFKHFKDKMTIIKKKVVSRADGKEELVSNNKRGIDTEDKAYEVFLGLYQGLT 288
           L++Q       H  D   +              LV++      TE +   VF+  Y  + 
Sbjct: 350 LVNQAVGAFKTHLPDASPV-------------NLVTDKY----TEGR---VFVSTYPTMM 389

Query: 289 NASD-IEDAYKDFSPEFFDLIVIDECHRGSAKEDSAWREILRYFNKATHIGLTATPKETK 347
              D   D+ + F    FDLIVIDE HR   ++   +R I  YF+    +GLTATPK+  
Sbjct: 390 GLIDEAHDSVRRFGVGHFDLIVIDEAHRSVYRK---YRAIFDYFDSML-VGLTATPKDEV 445

Query: 348 EVSNIEYF----GDPIYTYSLKQGIDDGFLAPYRVVRVNLNVDAEGWR----PEQGKKDK 399
           +      F    G P   Y L + + +  L P   + V L    EG R     E+ K+  
Sbjct: 446 DKDTYSLFDLEKGVPTDAYGLDEAVANSHLVPPVPISVPLKFQREGIRYDDLSEEEKEQW 505

Query: 400 DG----------KEVEDRVYNRKDFDKTLVIDERTQTVARKLTEFLKGYDRFAKTIVFCS 449
           D            EV+    N+  F+    +D+  + +  K  +   G D   KTI+F  
Sbjct: 506 DAVEWNEDGIMPAEVDTEAMNKWLFNID-TVDKALEVLMTKGQKVAAG-DLLGKTIIFAK 563

Query: 450 DIDHAERMRFALSNLNADLVAKNHKYIMQITGDNDEGKRELDNFINPEETYPVIATTSEL 509
           + DHA    F     +A+       +   +T      +  +D+F  PE+  P IA + ++
Sbjct: 564 NNDHA---AFIAKRFDANYPQYKGHFARMVTYKTTYAQSIIDDFAKPEK-MPHIAVSVDM 619

Query: 510 MTTGVDAQTCRVIVLDAEIKSMTKFKQIVGRGTRINEE-FG----KMFFTILDF-RNVTD 563
           + TG+D      +V    ++S TKF Q+VGRGTR+  + FG    K  F I DF +N+  
Sbjct: 620 LDTGIDVPEIVNLVFFKAVRSKTKFWQMVGRGTRLRPDLFGPGEDKKNFFIFDFCQNLEF 679

Query: 564 LFADKDF 570
             A +DF
Sbjct: 680 FGASRDF 686