Pairwise Alignments

Query, 640 a.a., ATP-dependent DNA helicase, RecQ family from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 654 a.a., RecQ domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  256 bits (653), Expect = 3e-72
 Identities = 182/597 (30%), Positives = 296/597 (49%), Gaps = 43/597 (7%)

Query: 6   LSVLKKVFGYDDFRPMQLDIVLSVAAGKDTLALLPTGGGKSICFQVPALMQEGICVVVSP 65
           +S L++ FG+ +FRP Q +++  + AG+ +LA+ PTG GKS+C+Q  AL    + +VVSP
Sbjct: 15  ISRLQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSP 74

Query: 66  LIALMKDQVDNLRKRGVLATAIYSGMRKREIDTTLDNCIYGNYKFLYVSPERLKSDLFIE 125
           L+AL+KDQ++ L+++G+ A +I S +   +    +     G  K L VS ER K++ F +
Sbjct: 75  LLALIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQLKLLMVSVERFKNERFRQ 134

Query: 126 RFKRMKVNMVAIDEAHCISQWGYDFRPPYLEIAALREYHPDTPFIALTASATLQVKQDIL 185
             + + ++M+ +DEAHCIS+WG++FRP YL++            + LTA+AT +VKQD+ 
Sbjct: 135 FIQSIPLSMLVVDEAHCISEWGHNFRPDYLKLPDYCRELSIPLVLLLTATATRKVKQDMA 194

Query: 186 EKLALRDPAVFVKSFARKNLSYAVR--KAENKLEKAIEILQKVGGSAIVYVRSRKATKEL 243
            +  ++   +    F R NL   V    +ENKL    + LQ   G+ IVYV  +   +E+
Sbjct: 195 IRFDIKPQHIVQTGFYRSNLDLTVLPVASENKLRILKQQLQSFDGAGIVYVTLQHTAEEV 254

Query: 244 AQALYRLGISATFYHAGLDKQLREQRQMEWKNNKVRVMVATNAFGMGIDKPDVRVVIHVD 303
           A  L  +G  A  YHAG D   R+Q Q ++   + +++VAT AFGMGIDK ++R VIH D
Sbjct: 255 ASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKSNIRFVIHYD 314

Query: 304 LPENLENYYQEAGRAGRDEWKAFAVLLYQDKDLEVLVERAEQSYPPIDFIKRVYQSL--- 360
           LP+++ENY QE GRAGRD   +  V L     +  +        P +  I  V  S+   
Sbjct: 315 LPKSIENYCQEIGRAGRDGQLSHCVTLANLDGINTVENFVYGDTPELASIATVIDSISQE 374

Query: 361 --ANYYRIAVGSSLMVSYDFDIIAFTNTYHLDLLMTYNALKILQEEALVELSEGYYSPST 418
             ANY+ + +                N  ++ LL     L  L+ + +++    YY+   
Sbjct: 375 TQANYWEVQLNQ------------LANQSNIRLLPLKTLLVQLELQGVIKPLYAYYADVQ 422

Query: 419 FHFLIGQSR-LYEYQIAHAALDPVI---KVLLRMYGGELFSEYLKI----REDKLATVLN 470
           + FL  Q+  L ++     A    I     + R++G   F+   +     R   LA +  
Sbjct: 423 YRFLQPQAHVLSQFSPERQAFLTQIFTHTQMKRVWGSLDFNALYQATGAERNRVLAALEY 482

Query: 471 IPEREVVKLLERMDNLDIAAYNKKKDQPQVTFLTHRYDAGRLPLNTKRIAERRDTSVEKA 530
           +  +++++L  +           K   P +    + Y A +      RIA+         
Sbjct: 483 LASQQLIELETKQITDVYQVETVKLSTPTLAKDLYHYFADKEAKEVARIAQ--------- 533

Query: 531 KAMVAYVTNTTMCRTRQLLAYFGE-VSDTSCGVCDVC---LEKKKAANAPNYQEEVR 583
             +V +   TT C    L  YF +  +  SCG C VC   + K   +N P + E+ R
Sbjct: 534 --LVRFFELTT-CLNYNLARYFDDNAAPKSCGHCSVCRGQVAKLTYSNTPIWPEDQR 587