Pairwise Alignments

Query, 1153 a.a., ATP-dependent nuclease subunit A from Caulobacter crescentus NA1000 Δfur

Subject, 1224 a.a., exodeoxyribonuclease V, beta subunit (RefSeq) from Shewanella amazonensis SB2B

 Score =  103 bits (258), Expect = 6e-26
 Identities = 222/921 (24%), Positives = 363/921 (39%), Gaps = 184/921 (19%)

Query: 17  VTANAGSGKTKTLIDRVARLLLA-----GVEPQAILCVTYTKAAAAEMQRRLFDRL--GK 69
           + A+AG+GKT T+ +   RLLL        + + IL VT+T AA +E++ R+  R+  G 
Sbjct: 20  IEASAGTGKTYTIANLYLRLLLGIGQQRPFKVEEILVVTFTNAATSELRDRIRRRIQDGF 79

Query: 70  WSVTSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHAFCEKLLR 129
                +      L +L+     R  A    D       AL+T     I TIH FC+++L 
Sbjct: 80  RLCLGEPSEDRFLTQLLHALPDRQLALRQLDL------ALKTLDEAAIYTIHGFCQRVLS 133

Query: 130 RFPLEAGV--SPGFTVMDDQAGAAIARAARRA--------VAAWVDS--------HDDAF 171
               E+ +     FT+ D +  +  A    RA        +AA V +          +  
Sbjct: 134 DMAFESALLFESEFTLDDSELLSMAAADFWRAHCYPLSADIAAMVQAKFASPKALEQELK 193

Query: 172 SEAYARFSVA-LDFQSFEAMFAGFEARRGQIMTYVQRCGGLAGAVSDAWRRCGFDGPTSA 230
           S   AR +V  L  + F  + +GF AR  ++                AW+R        A
Sbjct: 194 SLLGARDAVVELQMEDFSKLASGFSARIARLRL--------------AWQR-------QA 232

Query: 231 ED-LATRAMARLDLPAWRAVASVLFDGGGKQDAKSAEALAAVARDPDATLDLAL--RALF 287
           ED L T     L+  ++   A          D  +A +L      P+  +          
Sbjct: 233 EDTLTTLCKLPLNGVSYGKAADGFPKLKNHWDTMTAWSLRCEGTPPEKAMQAVAYGNIKL 292

Query: 288 TEGGE----GTPATWPAKTSGLKSREDLREA-LLLEQAKLEAAREQVRAAR--VAEDTQN 340
            +GG+     T +        L ++E+L  A L+L + +++A  + ++A R  +A D   
Sbjct: 293 NKGGQLPGPETLSLLVQIDELLHAQENLMPAFLVLAKNEIQARFDGLKAERNLMAPDDLL 352

Query: 341 ALLLAGLYIERHMAEKEARGALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHILLDEA 400
             L   L ++         G    +++  +  L L+ +V + + +          L+DE 
Sbjct: 353 KHLAKALGVQ---GSGSGSGFEPASEIDREIALRLSSEVASRFPM---------ALIDEF 400

Query: 401 QDTAPEQWEILRALTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEE 460
           QDT P Q+ I  AL            +  +   + L ++GD KQ+IY+F+G D       
Sbjct: 401 QDTDPLQFAIFSAL------------YRQQPRAQGLLMIGDPKQAIYAFRGGD------- 441

Query: 461 TQGYISRIEAVGAVGKGVPLTVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDLVRHEL 520
              Y+       A      L  +YRS+  ++  V+ +FS    RE V      D +  E 
Sbjct: 442 IHTYLGARRTAAA---HYSLGTNYRSSSAMVQAVNTVFS---VRERV---FLSDEIPFEP 492

Query: 521 FRHGHPGCVDLWPLTRELPGEDREAWEKPLDEEGERSANRRLAEAIAAETRAILDRGDAV 580
                 G   L  +  +  G   +     L E+ ++  N++ A A+ AE        DA 
Sbjct: 493 VAASDSGAKTLL-IDGKTQGPALQI--ALLGEDPDKGLNKQTARALMAE--------DA- 540

Query: 581 FDKDLGRHRAAHAGDILVLVRRRKALFEEIIRALKRRGVPVAGADRLALSSHIAFEDLVA 640
                    AAH G +L L    +A+  +  R L  + + V   DR   +          
Sbjct: 541 ---------AAHIGQLLCLATEGRAVLADKQRPLLAKDIAVLVRDRNEAA---------- 581

Query: 641 LGRFILFPDDDLT---LAALLKTPFCGLGDDDVYALAKGRR--GTLWVELTRRSEERPEW 695
                 F  D LT   + A+       L  D+V+A  +       L      R E+R   
Sbjct: 582 ------FIKDALTRRNIGAVF------LSRDNVFATKEASELLHVLAALAQPRDEKRLRA 629

Query: 696 AAARAVLDWALA--------EGRRRQPFEFYAGWLGLTDADG-------RSHRAKVLTRL 740
           A A  ++ W+L+        E  RRQ  E +  W       G        +   K+L RL
Sbjct: 630 AMATRLMGWSLSEIAAFNQDEEARRQALECFERWHQRWQKQGVMPALMAFADDTKLLERL 689

Query: 741 GA--EAEEALDEF--LAQVMEAEQRGVRDLEALVADF------AALDIIVKREMEGARRE 790
           G   EA+  L +F  L +++E     +  + AL+  F         D  ++  +E  +  
Sbjct: 690 GGDKEADRRLTDFRHLCELLEQAGASLDGISALLGWFEQALLDPGSDEAMQLRLESEQNL 749

Query: 791 VRVMTAHGSKGLEAPIVFLPETTVKRGAGG--SPLLVTEDGALLWCASGKNDCAVSAKAR 848
           V+++T H SKGLE  + ++P  ++ R + G  SPLL  +D  L+W     ++      A 
Sbjct: 750 VQIVTIHKSKGLEYGLCYIPFLSLARDSRGKPSPLLYHKDDRLVWDLLQTDEGVECYDAE 809

Query: 849 KLREDKESQEALRLLYVALTR 869
           +L ED      LRLLYVALTR
Sbjct: 810 RLGED------LRLLYVALTR 824