Pairwise Alignments

Query, 1153 a.a., ATP-dependent nuclease subunit A from Caulobacter crescentus NA1000 Δfur

Subject, 768 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score = 77.0 bits (188), Expect = 5e-18
 Identities = 159/620 (25%), Positives = 220/620 (35%), Gaps = 153/620 (24%)

Query: 361 ALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHILLDEAQDTAPEQWEILRALTADFFV 420
           A DF DL+     + T+  +   VL        +IL+DE QDT   Q+  LR L      
Sbjct: 207 AADFGDLLLHCLTIFTKHPD---VLADYSKMFHYILVDEYQDTNVAQYLWLRLLA----- 258

Query: 421 GETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEETQGYISRIEAVGAVGKGVPL 480
                     R    +  VGD+ QSIYS++GA+         G I R EA       V L
Sbjct: 259 ----------RGHGNICCVGDDDQSIYSWRGAE--------VGNILRFEADFPGATVVRL 300

Query: 481 TVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDLVRHELFRHGHPGCVDLWPLTRELPG 540
             +YRST  +L+                      L+RH   R                 G
Sbjct: 301 ERNYRSTPTILA------------------AASGLIRHNKGR----------------LG 326

Query: 541 EDREAWEKPLDEEGERSANRRLAEAIAAETRAILDRGDAVFDKDLGRHRAAHAGDILVLV 600
           +D  A E   DE G+    R L +    E R ++D      D +  +        + VLV
Sbjct: 327 KDLRAGEG--DEAGDAVIVRGLWDG-EEEARRVVD------DIETRQRAGDRLNGMAVLV 377

Query: 601 R---RRKALFEEIIRALKRRGVP--VAGADRLALSSHIAFEDLVALGRFILFPDDDLTLA 655
           R   + +A  E +I A    GVP  V G  R      I   D +A  R +  PDD L   
Sbjct: 378 RAGFQTRAFEERLILA----GVPYRVVGGARFYERQEI--RDAIAYLRLVAQPDDSLAFE 431

Query: 656 ALLKTPFCGLGDDDVYALAKGRRGTLWVELTRRSEERPEWAAARAVLDWALAEGRRRQPF 715
            ++  P  GLGD  +  L +  R    + L R + E  E    R     AL     R   
Sbjct: 432 RIINLPRRGLGDASLQTLMRASR-MASISLMRAAREAIETDELRPQARKAL-----RAFL 485

Query: 716 EFYAGWLGLTDADGRSHR-AKVLTRLG---------AEAEEALDEFLAQVMEAEQRGVRD 765
           +    W  L DA         VL   G         +   +   E L +++ A    +++
Sbjct: 486 DDMGRWRSLADAMAPDELCGTVLDESGYLEMWRKDKSPDAQGRVENLKELVSA----LKE 541

Query: 766 LEALVADFAALDIIVKREMEGARREVRVMTAHGSKGLEAPIVFLP----ETTVKRGAGGS 821
            E+L A    + +++  E       V +MT H +KGLE   VFLP    E    R A   
Sbjct: 542 FESLGAFLEHVSLVMDNEARATEDAVTLMTLHAAKGLEFDTVFLPGWEEEIFPHRRA--- 598

Query: 822 PLLVTEDGALLWCASGKNDCAVSAKARKLREDKESQEALRLLYVALTRARERLILCGRID 881
              + E+GA                       +  +E  RL YV LTRAR+R I+    +
Sbjct: 599 ---LDENGA-----------------------EALEEERRLAYVGLTRARKRAIISFVAN 632

Query: 882 ARTKDDKVGGWYAAARAAF--------AHPDIAPGVRTIGDGETAFLRYGPDPLGAP--- 930
            R  ++    W A   + F           D A GV   G    A    G   LG P   
Sbjct: 633 RRVYNE----WRACLPSRFIDELPPEVVERDSASGVYGSGAQGYADAPGGWGRLGGPGSW 688

Query: 931 -----RVAPATAAVAAPPAW 945
                  APA    A    W
Sbjct: 689 GGGWGNAAPARVPAAGDTPW 708



 Score = 40.8 bits (94), Expect = 4e-07
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 3  DPQRIAADPTISA--FVTANAGSGKTKTLIDRVARLLLAG-VEPQAILCVTYTKAAAAEM 59
          +P++ AA  T      V + AG+GKT+ L  R+A++L    V P  +L VT+T  AA EM
Sbjct: 29 NPEQRAAVTTTDGPVLVLSGAGTGKTRVLTARLAQILATRPVRPWQVLAVTFTNRAAREM 88

Query: 60 QRRLFDRLG 68
          + R    +G
Sbjct: 89 RERAGAMIG 97