Pairwise Alignments

Query, 1153 a.a., ATP-dependent nuclease subunit A from Caulobacter crescentus NA1000 Δfur

Subject, 1223 a.a., exodeoxyribonuclease V, beta subunit (RefSeq) from Shewanella loihica PV-4

 Score = 92.4 bits (228), Expect = 2e-22
 Identities = 170/655 (25%), Positives = 266/655 (40%), Gaps = 131/655 (20%)

Query: 273 RDPDATLDLALRAL------FTEGGEGTPA---------TWPAKTSGLKSREDLREALLL 317
           R+ DATL+L L+AL      F +  +G P           W A+   L   + L  AL L
Sbjct: 231 RERDATLEL-LKALPLNGTRFGKKDQGYPKLETLFAAMDNWAAQPLSLPDNKVLG-ALAL 288

Query: 318 EQAKLEAAREQ---------VRAARVAEDTQNALLLAGLY------IERHMAEKEARGAL 362
              KL    E              RV E T + L+ + LY        R  A+K+ +   
Sbjct: 289 GGLKLNKGGESPTPEQAPLLAHIERVTE-TIDTLVPSFLYGARDGIKARFAAQKQLKNLR 347

Query: 363 DFTDLIDKTRLLLTEKVEAAWVLYK-LDGGIDHILLDEAQDTAPEQWEILRALTADFFVG 421
              DL+      L+E+ +    L + +       L+DE QDT P Q++I  ++     V 
Sbjct: 348 TPDDLLIALADALSEETDQEQALARAIAKRFPIALIDEFQDTDPLQYQIFSSIYQGQQVS 407

Query: 422 ETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEETQGYISRIEAVGAVGKGVPLT 481
             S+          L ++GD KQ+IY+F+GAD            + I A G       L 
Sbjct: 408 TDSD--------LGLLMIGDPKQAIYAFRGAD----------IHTYIHARGQTENHYSLD 449

Query: 482 VSYRSTHEVLSFVDALFS---DPDTREGVPPPVGQDLVRHELFRHGHPGCVDLWPLTR-- 536
            +YRS+  ++  V+ LFS   DP   + +P     +LV+           V+  P T   
Sbjct: 450 TNYRSSQAMIEAVNQLFSRSDDPFISQAIP----FELVKASP-EAAEKRLVEKVPQTSAL 504

Query: 537 --ELPGEDREAWEKPLDEEGERSANRRLAEAIAAETRAILDRGDAVFDKDLGRHRAAHAG 594
             +L GED      P     + SA  +LAE  A E   +L+  +A   + L + +   A 
Sbjct: 505 RLKLLGED------PNAGLNKASARSQLAEDAANEIARLLN--EAQRGECLKQDKPLKAK 556

Query: 595 DILVLVR-RRKALFEEIIRALKRRGVPVAGADRLALSSHIAFEDLVALGRFILFPDDDLT 653
           DI VLVR R +A +  I  AL  RG+      R ++   +  ++L  +   I  P D+  
Sbjct: 557 DIAVLVRDRNEAAY--IKTALSSRGIGAVFLSRDSVFDTLVAKELALVLLAIANPKDERA 614

Query: 654 LAALLKTPFCGLGDDDVYALAKGRRGTLWVELTRRSEERPEWAAARAVLDWALAEGRRRQ 713
           L + + T   G                                 A+A+  + L E  R+Q
Sbjct: 615 LRSAMATALLGYD-------------------------------AQAIHGFNLDEDVRQQ 643

Query: 714 PFE----FYAGWLG---LTDADGRSHRAKVLTRL--GAEAEEALDEF--LAQVMEAEQRG 762
             E     +  WL    +      +   +++ RL    E +  L +F  L ++++ +   
Sbjct: 644 QLEAFDNLHQTWLKRGIMPCMMALAADTRLIERLLTADEGQRRLTDFRHLGELLQQKAME 703

Query: 763 VRDLEALVADFAALDIIV------KREMEGARREVRVMTAHGSKGLEAPIVFLPETTVKR 816
           +  + AL+  +    I V      +  +E  +  V+++T H SKGLE PI FLP  ++ R
Sbjct: 704 LDGISALLNWYQQTLIEVSSTEEAQLRLESEQNLVQIVTIHKSKGLEYPICFLPFVSLAR 763

Query: 817 GA--GGSPLLVTEDGALLWCASGKNDCAVSAKARKLREDKESQEALRLLYVALTR 869
            +    +P+L  E  AL+W      +     KA  L ED      LRLLYVALTR
Sbjct: 764 DSRRKPAPMLYHEQDALVWDIDQSEEGWAKYKAENLAED------LRLLYVALTR 812



 Score = 45.1 bits (105), Expect = 4e-08
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)

Query: 17  VTANAGSGKTKTLIDRVARLLL-----AGVEPQAILCVTYTKAAAAEMQRRLFDRLGKWS 71
           + A+AG+GKT T+     RLLL     A +  + IL VT+T AA  E++ R+  ++    
Sbjct: 19  IEASAGTGKTYTIAGLYVRLLLGDSQRAPLSCEQILVVTFTNAATQELRDRIRKKI---Q 75

Query: 72  VTSDADLRAEL-VKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHAFCEKLLRR 130
           +   A L  E+   L+    +  + ++ S A      AL++     I TIH FC+++L  
Sbjct: 76  LAYRAFLGMEVDDPLINTLYSEAEPEARSQALKRLDLALKSLDEAAIFTIHGFCQRILSD 135

Query: 131 FPLEAGV--SPGFTVMDDQ 147
              E+ +     FT+ D +
Sbjct: 136 MAFESSLLFESEFTLDDSE 154