Pairwise Alignments

Query, 1153 a.a., ATP-dependent nuclease subunit A from Caulobacter crescentus NA1000 Δfur

Subject, 1161 a.a., UvrD/REP helicase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  114 bits (284), Expect = 6e-29
 Identities = 306/1229 (24%), Positives = 448/1229 (36%), Gaps = 194/1229 (15%)

Query: 11   PTISAFVTANAGSGKTKTLIDRVARLLLAGVEPQA---------------ILCVTYTKAA 55
            PT++  + A+AGSGKT TL  R   LL    +                  IL VT+T  A
Sbjct: 4    PTLTQ-IKASAGSGKTYTLTRRFLSLLAGARDEDGRACSLAVEGGHCWPDILAVTFTNKA 62

Query: 56   AAEMQRRLFDRLGKWSVTSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGL 115
            A+EM+ R+   L + ++   A  R +     G   A   A++      +    L   G L
Sbjct: 63   ASEMKERVIRLLKEHALADPAQARKD-----GGDGAWPPARAARWVDII----LRRYGAL 113

Query: 116  KIQTIHAFCEKLLRRFPLEAGVSPGFTVM---DDQAGAAIARAARRAVAAWVDSHDDAFS 172
             I+TI +    L+R   LE  + P F      D+           RA        DD   
Sbjct: 114  NIRTIDSLLTMLVRLAALELSLPPDFEPSFSPDEYFEPLYDLILDRARRGDAQLRDDV-R 172

Query: 173  EAYARFSVALDFQSFEAMFAGFEARRGQIMTYVQRCGGLAG--------AVSDAWRRCGF 224
            +A        D + F  + AG   R  Q++      GG++G        A  DA    G 
Sbjct: 173  DACRLLLFHTDLKGF-TVGAGLRVRLSQLLQLHLAEGGMSGPDPLNAGPAPFDADAPRGG 231

Query: 225  DGPTSAEDLATRAMA-RLDLPAWRAVASVLFDGGGKQDAKSAEALAAVARDPDATLDLAL 283
                  + LA + +A   D+    A  S +        A +         +  A   L+ 
Sbjct: 232  LPDVDTDALAAKLVAIHADMQDATATLSRILAEEQLSAAANLHKFLDKCAENSAFSPLSK 291

Query: 284  RALFTEGGEGTPATWPAKTSGLKSREDLREALLLEQAKLEAAREQVRAARVAEDTQNALL 343
             A   +GG         K S  K  +D R A     A  +A  +     R+ +       
Sbjct: 292  SAYLEKGGLDDCLL---KASKGKGSDDARAAF---DAWRDACNDFAVRGRLIQRALQVAP 345

Query: 344  LAGLY--IERHMAEKEAR-GALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHILLDEA 400
            LAGL   +  H+ + + R G L    +    R +L  +   +    ++   + H+L+DE 
Sbjct: 346  LAGLARAMATHLPDFQRREGKLPQPLIPLHARDVLNGEFGVSEAFCRMGTRLAHVLIDEF 405

Query: 401  QDTAPEQWEILRALTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEE 460
            QDT+ +QW  +  L  +         W           VGD KQ+IY ++G D + L ++
Sbjct: 406  QDTSRDQWAAIEPLAVECLSRGGGLTW-----------VGDVKQAIYGWRGGD-SALFDD 453

Query: 461  TQGYISRIEAVGAVGKGVPLTVSYRSTHEVLSFVDALFS---DPDTREGV-PPPVGQDLV 516
                 + + A+    +   L  ++RS   ++   + +F+   DP    GV    +G    
Sbjct: 454  ILASPA-LTAIVPDPQRETLPRNWRSRAAIVRHNNTVFAQLDDPLRARGVLSAMLGDKTP 512

Query: 517  RHELFRHGHPGCVDLWPLTRELPGED--REAWEKPLDEEGERSANRRLAEAIAAETRAIL 574
             H L               +E+P  D  +    + +   GE + + R  + +  + RA+ 
Sbjct: 513  DHVLDEAAASVARAFAGAAQEVPDRDSAQGGLVRIVPVHGEDNGDLR--DKVRQQLRAL- 569

Query: 575  DRGDAVFDKDLGRHRAAHAGDILVLVRRRKALFEEIIRALKRRGVPVAGADRLALSSHIA 634
                  F  DL   R     D+ VLVR+      ++   L   GVPV   + L L+ H  
Sbjct: 570  ------FMDDLAARRPWR--DVAVLVRKNDES-AQVASWLMDWGVPVVTENSLRLADHPL 620

Query: 635  FEDLVALGRFILFPDDDLTLAALLKTP--FCGLGDDDVYALAKGRRGTLWVELTRRSEE- 691
                VAL  F+ +P + L L  +L     F G+     +AL    R  L     R +++ 
Sbjct: 621  VTQTVALLAFLDYPPNALALWEVLTGVELFGGISGLSDHAL----RDWLADRCARPADDP 676

Query: 692  ---RPEWAAARAVLDWALAEGRRRQPFEFYAGWLGLTDADGRSHRAKVLTRLGAEAEEAL 748
               +   A  RA   + +A      PF   AG +G  D          + +   E    +
Sbjct: 677  RGGKGLLADFRAT--FPVAWETWLAPFYARAGLMGPYDTVREIFERFRVAQRHPEDIGYV 734

Query: 749  DEFLAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRVMTAHGSKGLEAPIVF 808
              FL  V  AE RG+  L   +  +       K  M  A   VRVMT H SKGLE P+V 
Sbjct: 735  RRFLEVVHNAESRGLTSLATFLEFWVESGGEEKVPMPEAMDAVRVMTMHKSKGLEFPVVV 794

Query: 809  LPETTVKRGAGGSPLLVTE-DGALLWCASGKNDCAVSAKARKLREDKESQEALRLLYVAL 867
            +P    +      PL+V E DG  L        C          +   + E L LLYV  
Sbjct: 795  IP-FHHQPDRTDPPLVVAELDGQPLLAPL----CPEMGDRYHHAQAAAAAEKLHLLYVGW 849

Query: 868  TR----------------------ARERLILCG-RIDARTKDDKVGGWYAAARAAFAHPD 904
            TR                      A  R +L G  ID  T  + V G    ARA  AH  
Sbjct: 850  TRPVDELHAYVTSTPFAERSSSLLAGVRALLTGCAID--TGQEYVAGVVPPARATDAHAG 907

Query: 905  IAPGVRTIGDGETAFLRYGPDPLGAPRVAPATAAVAAPPAWIMAQATPEPAAARYAAPSR 964
                     D E        D   APR     AA AAPP    A   P P+ AR  AP  
Sbjct: 908  --------SDTE--------DTREAPR--DEAAAQAAPPDAPQAVPAPLPSPARAPAPGP 949

Query: 965  LEDTARVPAP------SPLARIAGLGRY---------------RRGELIHKLLQLLPDLP 1003
            L   A   AP      +P   +  L R                RRG L+H  L+ L  L 
Sbjct: 950  LPGHAAAHAPDLPSPAAPWRPMQWLPRLKIFRNQLEEFTFTERRRGMLVHACLEQL-RLT 1008

Query: 1004 PAQRPDAARRILAAER---------DLTDTQRTEMASAAFEVLEDARFAAVFGPNSRAEV 1054
                 DAAR +    R         + T  + T M  A    L  A      G   ++ +
Sbjct: 1009 GTPDQDAARAVAHGMRAFPLPVPDPEATANELTAML-AWLAALPQAAHWFTHGVPEQSIM 1067

Query: 1055 ALAGTSAHLPQGLAVSGRVDRLVVDDARVLVVDYKTNRPSPDRIEDADTAYLAQMAVYVA 1114
               G S H         R D +V D     VV++KT RPS D        ++AQ+  Y+ 
Sbjct: 1068 DAQG-SIH---------RTDLMVDDGETCTVVEWKTGRPSDD--------HVAQVRRYLG 1109

Query: 1115 VLREVFPGR---TVEAALVWTDGPKLMPV 1140
            +L E   GR    V   LV+ DG  + PV
Sbjct: 1110 LLAEA-TGRGPAGVRGVLVYLDGRTVRPV 1137