Pairwise Alignments

Query, 1153 a.a., ATP-dependent nuclease subunit A from Caulobacter crescentus NA1000 Δfur

Subject, 1263 a.a., exodeoxyribonuclease V, beta subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 82.0 bits (201), Expect = 3e-19
 Identities = 137/550 (24%), Positives = 218/550 (39%), Gaps = 70/550 (12%)

Query: 350 ERHMAEKEARGALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHILLDEAQDTAPEQWE 409
           ER   +K+ +  L   DL+  T L    +     +   +       L+DE QDT P Q+ 
Sbjct: 339 ERFAKQKQQKNVLTPDDLL--TTLAAAMQANPDTLPKAVASRFPVALIDEFQDTDPLQFA 396

Query: 410 ILRALTADFFVGETSEGWSGRR----AERTLFVVGDEKQSIYSFQGADPTRLLEETQGYI 465
           I   +       +T    +  +    ++ +L ++GD KQ+IY+F+GAD            
Sbjct: 397 IFSGIYQTRLGLDTQNSAAEPKPRTDSKLSLLMIGDPKQAIYAFRGAD----------IY 446

Query: 466 SRIEAVGAVGKGVPLTVSYRSTHEVLSFVDALF---SDPDTREGVP-PPVGQDLVRHELF 521
           + IEA         L  +YRS+  +++ V+ LF   SDP   + +P  PV          
Sbjct: 447 TYIEARRQTQAHYFLDTNYRSSRNLVAGVNHLFAQHSDPFISQSIPFDPVKT-------- 498

Query: 522 RHGHPGCVDLWPLTRELPGEDREAWEKPLDEEGE-----RSANRRLAEAIAAE-TRAILD 575
               P       L  + P  +  A    L  EGE      SA + LAE  AAE TR +  
Sbjct: 499 ----PASAAAKQLVEQAP--NSAALRLKLLSEGETGLNKASARQTLAEDTAAEITRLLTQ 552

Query: 576 RGDAVFDKDLGRHRAAHAGDILVLVRRRKALFEEIIRALKRRGVPVAGADRLALSSHIAF 635
             +       G      A DI +LVR R      +  AL +R +      R ++   +  
Sbjct: 553 AANGQCRTPKG---PLIAKDIAILVRDRNEA-AVMKTALSKRQIGAVFLSRDSVFETVEA 608

Query: 636 EDLVALGRFILFPDDDLTLAALLKTPFCGLGDDDVYALAKGRRGTLWVELTRRSEERPEW 695
            ++  + R +  P D+  L + L T   G   + ++A  +         L  +  E  + 
Sbjct: 609 REMALILRALASPKDERALRSALATALLGYRAEQIHAFNQDEEQR--QRLLEQFFELHQI 666

Query: 696 AAARAVLDWALAEGRRRQPFEFYAGWLGLTDADGRSHRAKVLTRLGAEAEEALDEF--LA 753
              R ++   L+     Q           T  D     A       +  E  L +F  LA
Sbjct: 667 WQKRGIMPALLSLANATQMVARLLHSPASTSTDQAEQDAAAQLE-ASNGERRLTDFRHLA 725

Query: 754 QVMEAEQRGVRDLEAL-------VADFAALDIIVKREMEGARREVRVMTAHGSKGLEAPI 806
           ++++ +   +  + AL       + D    D    R +E  +  V+++T H SKGLE P+
Sbjct: 726 ELLQQKATEIDGISALLNWYEQQLIDNTGTDEQQLR-LESEQNLVQIVTIHKSKGLEYPV 784

Query: 807 VFLPETTVKRG--AGGSPLL---VTEDGA--LLWCASGKNDCAVSAKARKLREDKESQEA 859
            F+P  ++ R      +P+L      DGA  L+W   G ++    AK   L ED      
Sbjct: 785 CFVPFVSLARDNRRRPTPMLYHRTNADGAQELVWDLEGTDEGWEQAKQETLAED------ 838

Query: 860 LRLLYVALTR 869
           LRLLYVALTR
Sbjct: 839 LRLLYVALTR 848



 Score = 44.3 bits (103), Expect = 6e-08
 Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 17/145 (11%)

Query: 14  SAFVTANAGSGKTKTLIDRVARLLLAG--VEP---QAILCVTYTKAAAAEMQRRLFDRLG 68
           S  + A+AG+GKT T+     RLLL     EP   + IL VT+T AA  E++ R+  R+ 
Sbjct: 20  SRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLNCEQILVVTFTNAATEELRDRIRRRI- 78

Query: 69  KWSVTSDADLRAELVKLVGEADARYDAKSLSDARAL----FAKALETPGGLKIQTIHAFC 124
              V     L  E+        A YD K+    RA+    F  AL++     I TIH FC
Sbjct: 79  --QVAFKCFLGLEINDPF--VQALYD-KTPEAERAIALRRFDLALKSLDEAAIFTIHGFC 133

Query: 125 EKLLRRFPLEAGV--SPGFTVMDDQ 147
           +++L     E+ +     FT+ D +
Sbjct: 134 QRILADLAFESSLLFESDFTLDDSE 158