Pairwise Alignments

Query, 179 a.a., ECF-family RNA polymerase sigma factor from Caulobacter crescentus NA1000 Δfur

Subject, 190 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella loihica PV-4

 Score = 50.8 bits (120), Expect = 1e-11
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 11  LMLRGLDGDTAAYREGLALLGVRLRAYFMRRMSGAPGDVEDLVQETLLAVHLKRSTWDSA 70
           L+ R   GD  A+R+       R+ A   R ++G     E+  QET + +  K   +D  
Sbjct: 31  LVQRAKQGDKTAFRQLYDQHHRRVYALCFR-LAGQTELAEEATQETFVRLWQKLPLFDGK 89

Query: 71  QSFTAWAHAVARYKLIDHWRRRKI--RQTLPLEDHVDFLADDAPDPGVALELDRALASLP 128
             FT W H++   + +   ++ K    + +P E+     A D    GV    D+ L  LP
Sbjct: 90  SQFTTWLHSLTVNQALSCIKKHKSFWARFMPSEE-THAAAIDFDYQGV----DKLLLRLP 144

Query: 129 QRQRMLVSDVKLTGLSLAEAGARAGISEGAAKVALHRALKALAE 172
           +R R++     L G    E   R  I+ G +K   HRA K L E
Sbjct: 145 ERARIVFVLYALEGYQHDEIAKRLNIAPGTSKAQYHRAKKLLQE 188