Pairwise Alignments

Query, 652 a.a., RNA polymerase sigma factor rpoD from Caulobacter crescentus NA1000 Δfur

Subject, 617 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score =  527 bits (1357), Expect = e-154
 Identities = 315/631 (49%), Positives = 408/631 (64%), Gaps = 33/631 (5%)

Query: 29  VKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDTLAMLSEMGVNVVEAEEDAENAEGG 88
           +K+ I++ + +GY+T  E+N  LP +   P+ +ED + M+++MG+NV E   DA+     
Sbjct: 11  LKELIQRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEVAPDADALLLA 70

Query: 89  EVATRDENTTVIASDKPAAYD----RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGR 144
           E  T DE     A+   AA +    RT DPVRMY+REMG+VELL+REGEI IAKRIE G 
Sbjct: 71  EADT-DEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGI 129

Query: 145 DTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEGTYAAINGVAAQPAAEDDEGP- 203
             ++  +     T ++I+   E + T    L ++  L G     +  AA P   + E P 
Sbjct: 130 REVMSAIAHFPGTVDSILADYERVTTEGGRLSDI--LSGYIDPDDDGAAAPQEVEPEAPQ 187

Query: 204 --AEPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAMEGELREGVMAILDAIASEFEAFR 261
             A+P  D+  +   E ++ E+E+  D G  P V+     LR G      A+A + E   
Sbjct: 188 TAAKPAADDKDDEDEEDSDTEEEEG-DGGPDPEVA----RLRFG------AVAEQLEKAN 236

Query: 262 KLQDKLVGSRLKGEDLSDADRKAYEGLSATIIQHLKTLKLNNNRIEALVEQLYAINKRLI 321
           K   K             A ++A E L A  I  +  +KL   + +ALVE++     ++ 
Sbjct: 237 KALKKH----------GRASQQAVEELEALAILFMP-IKLVPKQYDALVERVRNALNQIR 285

Query: 322 GLEGRLLRLA-DSYGISRGEFLKAYFGSELNPTWSEQVKAMGVRWTKFVENDSQSVTDIR 380
             E  +++L      + R +FL+ +  +E N  W+EQ+ +   ++ + + N  + +   +
Sbjct: 286 AQERAIMQLCVRDARMPRADFLRQFPSNETNLDWAEQLASGKGKYAEAIGNRKEDIQRCQ 345

Query: 381 SEIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQF 440
             +  L  E  + I D + I + +  GE +AR+AKKEMVEANLRLVISIAKKYTNRGLQF
Sbjct: 346 QMLIELEQECSLAIADIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF 405

Query: 441 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 500
           LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN
Sbjct: 406 LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 465

Query: 501 KIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGD 560
           K+ R SRQML E+GREPTPEEL E++ MP +K+RKVLKIAKEPIS+ETPIGD+EDSHLGD
Sbjct: 466 KLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD 525

Query: 561 FIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFS 620
           FIED     PID A   +L+E T  VL+ LT RE +VLRMRFGI MNTDHTLEEVG+QF 
Sbjct: 526 FIEDSAMQSPIDVATVESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFD 585

Query: 621 VTRERIRQIEAKALRKLKHPSRSRKLRSFLD 651
           VTRERIRQIEAKALRKL+HP+RS  LRSFLD
Sbjct: 586 VTRERIRQIEAKALRKLRHPTRSEHLRSFLD 616