Pairwise Alignments

Query, 652 a.a., RNA polymerase sigma factor rpoD from Caulobacter crescentus NA1000 Δfur

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Sinorhizobium meliloti 1021

 Score =  852 bits (2202), Expect = 0.0
 Identities = 464/676 (68%), Positives = 525/676 (77%), Gaps = 32/676 (4%)

Query: 8   ETEAPETTGGDGPLLDLTDAGVKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDTLAM 67
           E +       DGPLLDL+D  VKK IK AK RGYVTMDELN VLPSEEV+ + IEDT++M
Sbjct: 10  EADVEREGAPDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMSM 69

Query: 68  LSEMGVNVVEAEEDAENA-------------EGGEVATRDENTTVIASDKPAAYDRTDDP 114
           LS+MG+NV+E EE  E A             EGGE+A     T + AS K    DRTDDP
Sbjct: 70  LSDMGINVIEDEEAEEAAASDDDDGADEGESEGGELAPAS-GTALAASKKKEPTDRTDDP 128

Query: 115 VRMYLREMGSVELLSREGEIAIAKRIEAGRDTMIRGLCESALTFEAIMVWREELGTGRIL 174
           VRMYLREMGSVELLSREGEIAIAKRIEAGR+TMI GLCES LTF+A+++WR+EL  G+ L
Sbjct: 129 VRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELNEGQTL 188

Query: 175 LREVIDLEGTYAAINGVAA------------QPAAEDDEGPAEPV----DDEAGEAKAEG 218
           LRE+IDLE TY+     AA            + AAE+ E          DD+      EG
Sbjct: 189 LREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKVRRTRTAANDDDITNVGGEG 248

Query: 219 AEGEDEDDFDDGAGPTVSAMEGELREGVMAILDAIASEFEAFRKLQDKLVGSRLKGED-L 277
              E+E++ DD +  +++AME ELR  VM  LD IA  ++  RKLQD+ V +RL     L
Sbjct: 249 QAPEEEEEDDDESNLSLAAMEAELRPQVMETLDVIAETYKKLRKLQDQQVEARLAATGTL 308

Query: 278 SDADRKAYEGLSATIIQHLKTLKLNNNRIEALVEQLYAINKRLIGLEGRLLRLADSYGIS 337
           S A  + Y+ L   +I+ +K+L LN NRI+ALVEQLY I+KRL   EGRLLRLA+SYG+ 
Sbjct: 309 SPAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDISKRLTQNEGRLLRLAESYGVK 368

Query: 338 RGEFLKAYFGSELNPTWSEQVKAM-GVRWTKFVENDSQSVTDIRSEIAALATETGVPIDD 396
           R  FL+ Y G+EL+P W + +  + G  W +F   ++Q++ DIR EI  LATETG+ I +
Sbjct: 369 REAFLEQYSGAELDPNWMKSISNLAGKGWKEFARAENQTIRDIRQEIQNLATETGISIAE 428

Query: 397 YRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 456
           +RRIV  VQKGEREAR AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
Sbjct: 429 FRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD 488

Query: 457 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGRE 516
           KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGRE
Sbjct: 489 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGRE 548

Query: 517 PTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQ 576
           PTPEELAEKLAMPLEKVRKVLKIAKEPISLETP+GDEEDSHLGDFIEDKNA+LPIDAAIQ
Sbjct: 549 PTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQ 608

Query: 577 SNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK 636
           +NLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK
Sbjct: 609 ANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK 668

Query: 637 LKHPSRSRKLRSFLDS 652
           LKHPSRSRKLRSFLDS
Sbjct: 669 LKHPSRSRKLRSFLDS 684