Pairwise Alignments

Query, 652 a.a., RNA polymerase sigma factor rpoD from Caulobacter crescentus NA1000 Δfur

Subject, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

 Score =  779 bits (2012), Expect = 0.0
 Identities = 434/691 (62%), Positives = 504/691 (72%), Gaps = 44/691 (6%)

Query: 5   SSAETEAPETTGGDGPLLDLTDAGVKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDT 64
           ++AE    +  GGD PLLD  +A VKK + + K RGY+T DELN  LP ++VS + IEDT
Sbjct: 7   NTAEAVNTQEEGGDSPLLDSMNAAVKKLVNRGKDRGYITYDELNNALPPDDVSSEQIEDT 66

Query: 65  LAMLSEMGVNVVEAEEDAEN--AEGGEVATRDENTTVIASDKPAAYD--RTDDPVRMYLR 120
           +AMLS+MG+NVVE EE+ E   A   E    +    V A+   +  D  RTDDPVRMYLR
Sbjct: 67  MAMLSDMGINVVEDEEEGEASAAPPAEAGEEEPGREVAATGNVSEDDIGRTDDPVRMYLR 126

Query: 121 EMGSVELLSREGEIAIAKRIEAGRDTMIRGLCESALTFEAIMVWREELGTGRILLREVID 180
           EMGSVELLSREGEIAIAKRIEAGR+ MI G+CES LT  A++ W + L  GR+LLR++ID
Sbjct: 127 EMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTIRALLQWHDALVDGRMLLRDIID 186

Query: 181 LEGTYAAING--VAAQPAAEDDEGPAEPVD-----------DEAGEAKAEGAE--GEDED 225
           L+ TY +  G  V A+   ED   P  P+            DEA EA   G +   EDED
Sbjct: 187 LDATYGSGAGPDVVAE-GLEDSVVPLSPLALSPARALPKEADEAEEAVTPGRDDDSEDED 245

Query: 226 DFDD-----GAGP------------------TVSAMEGELREGVMAILDAIASEFEAFRK 262
           + DD     GAG                   +++AME EL   V+   + IA+ +   +K
Sbjct: 246 EGDDAKPADGAGDEEAAPSGEDEGDGSENNVSLAAMEQELMPRVLETFEHIATTYGKLKK 305

Query: 263 LQDKLVGSRLKGEDLSDADRKAYEGLSATIIQHLKTLKLNNNRIEALVEQLYAINKRLIG 322
            QD+ + +  KGE+   A  + Y+ L   ++  ++ + LNN RIE LVEQL A+NK LI 
Sbjct: 306 AQDQRIAALQKGEEPGAALERKYDKLKLELVGLMEDVHLNNARIEQLVEQLNALNKGLIT 365

Query: 323 LEGRLLRLADSYGISRGEFLKAYFGSELNPTWSEQVKAM-GVRWTKFVENDSQSVTDIRS 381
            EG+LLRLA+   I R EFL  YFG E++P+W E V A+ G  W  F    +  + DIR 
Sbjct: 366 QEGKLLRLAERAKIRRDEFLDHYFGREMDPSWREDVAALPGKGWRDFTTRFADEIKDIRG 425

Query: 382 EIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFL 441
            IA +A  + +PI ++RRIV TVQKGEREA +AKKEM+EANLRLVISIAKKYTNRGLQFL
Sbjct: 426 SIAEIAERSLLPIPEFRRIVSTVQKGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFL 485

Query: 442 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 501
           DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK
Sbjct: 486 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 545

Query: 502 IVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDF 561
           +VRTSRQMLHEIGREPTPEELAEKL MPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDF
Sbjct: 546 LVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDF 605

Query: 562 IEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSV 621
           IEDKNA+ P+DAAI SNLRET TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSV
Sbjct: 606 IEDKNAVQPLDAAINSNLRETCTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSV 665

Query: 622 TRERIRQIEAKALRKLKHPSRSRKLRSFLDS 652
           TRERIRQIEAKALRKLKHPSRSRKLRSFLD+
Sbjct: 666 TRERIRQIEAKALRKLKHPSRSRKLRSFLDN 696