Pairwise Alignments

Query, 652 a.a., RNA polymerase sigma factor rpoD from Caulobacter crescentus NA1000 Δfur

Subject, 615 a.a., RNA polymerase, sigma 70 subunit, RpoD from Marinobacter adhaerens HP15

 Score =  517 bits (1331), Expect = e-151
 Identities = 311/637 (48%), Positives = 399/637 (62%), Gaps = 51/637 (8%)

Query: 29  VKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDTLAMLSEMGVNVVEAEEDAEN---A 85
           +K  I + K +GY+T  E+N  LP +   PD +ED + M+++MG+ V E   DA+     
Sbjct: 10  LKDLIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIRMINDMGIQVCEETPDADTLLMT 69

Query: 86  EGGEVATRDENTTVIASDKPAAYD----RTDDPVRMYLREMGSVELLSREGEIAIAKRIE 141
           EG   +T DE     A+   AA +    RT DPVRMY+REMG+VELL+REGEI IAKRIE
Sbjct: 70  EGD--STADEAAAAEAAAALAAVETDAGRTTDPVRMYMREMGTVELLTREGEIVIAKRIE 127

Query: 142 AG-RDTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEGTYAAI-----NGVAAQP 195
            G RD M            A+  +    GT       +++ EG  + I     +   A+P
Sbjct: 128 EGIRDVMA-----------AVAHFPGTAGTVIQAYDRILENEGRISDIVTGFLDPDDAEP 176

Query: 196 AAEDDEGPAEPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAMEGELREGVMAILDAIAS 255
              +D  P E  DD   ++ ++  +   E++ D+G  P  + +  EL             
Sbjct: 177 FMGEDTTP-ESSDDS--DSDSDDDDDSSEEETDNGPDPEETRLRFEL------------- 220

Query: 256 EFEAFRKLQDKLVGSRLKGEDLSDADRKAYEGLSATIIQHLKTLKLNNNRIEALVEQLYA 315
                  L +KL  +         +D+K  E L+  + Q     KL N   + LV  + +
Sbjct: 221 -------LNEKLEAANKALAKHGRSDKKTQEALNE-LGQVFAPFKLANKAFDELVNVVRS 272

Query: 316 INKRLIGLEGRLLRLA-DSYGISRGEFLKAYFGSELNPTWSEQVKAMGVRWTKFVENDSQ 374
            N  +   E  ++++      + R +F+K++ G+E N  W++++      +   +     
Sbjct: 273 TNDLVRENERAIMQICVRECKMPRKDFIKSFPGNETNLDWADKIAKSKKPYAAPLAERID 332

Query: 375 SVTDIRSEIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYT 434
            V  ++  I  + TE  + + D + I + V  GE +AR+AKKEMVEANLRLVISIAKKYT
Sbjct: 333 EVVRLQKRIQNVQTEVDLDVADIKEINRRVSIGEAKARRAKKEMVEANLRLVISIAKKYT 392

Query: 435 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 494
           NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH
Sbjct: 393 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 452

Query: 495 MIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEE 554
           MIETINK+ R SRQML E+GREPTPEEL E++ MP +K+RKVLKIAKEPIS+ETPIGD+E
Sbjct: 453 MIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDE 512

Query: 555 DSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEE 614
           DSHLGDFIED  A+ P+D+A    LRE T  VLA LT RE +VLRMRFGI MNTDHTLEE
Sbjct: 513 DSHLGDFIEDIQALSPVDSATAEGLREATRSVLAGLTARESKVLRMRFGIEMNTDHTLEE 572

Query: 615 VGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 651
           VG+QF VTRERIRQIEAKALRKL+HPSRS  LR F+D
Sbjct: 573 VGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRGFID 609