Pairwise Alignments

Query, 652 a.a., RNA polymerase sigma factor rpoD from Caulobacter crescentus NA1000 Δfur

Subject, 616 a.a., RNA polymerase sigma-70 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  528 bits (1359), Expect = e-154
 Identities = 310/634 (48%), Positives = 409/634 (64%), Gaps = 38/634 (5%)

Query: 29  VKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDTLAMLSEMGVNVVEAEEDAENAEGG 88
           +K  + + K +GY+T  E+N  LP++ V  D IED + M+++MG+ V E   DA+     
Sbjct: 9   LKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAPDAD----- 63

Query: 89  EVATRDENTTVIASDKPAA--------YDRTDDPVRMYLREMGSVELLSREGEIAIAKRI 140
           ++   ++NT   A+++ AA          RT DPVRMY+REMG+VELL+REGEI IAKRI
Sbjct: 64  DMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIAKRI 123

Query: 141 EAGRDTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEGTYAAINGVAAQPAAEDD 200
           E G +T+   + E       I+   ++     + L ++I        +N        E+D
Sbjct: 124 EEGINTVQSSVAEYPQAIAMILEQYDQYEADELRLSDIIS-----GFVN------PDEED 172

Query: 201 EGP-AEPVDDEAGEAKAEGAEGEDEDDFDDGAGP-TVSAMEGELREGVMAILDAIASEFE 258
            GP A  +  E  E   E  + E++D+ +DG G       +G   E        + + +E
Sbjct: 173 LGPTATHIGSELSEEDLEDEDDEEDDEDEDGDGDGDDDGNKGPDPEEARERFSQLRTAYE 232

Query: 259 AFRKLQDKLVGSRLKGEDLSDADRKAYEGLSATIIQHLKTLKLNNNRIEALVEQLYAINK 318
           +  K+ D       KG +  ++ +  +E     I +  K  +L   + + LV+ + ++  
Sbjct: 233 SALKIIDA------KGREHPESIQALFE-----IGEIFKEFRLVPKQFDRLVKSMRSMMD 281

Query: 319 RLIGLEGRLLRLA-DSYGISRGEFLKAYFGSELNPTWSEQVKAMGVRWTKFVENDSQSVT 377
           R+   E  L++L  +   + +  F+K + G+E N  W E  K     + + +    + V 
Sbjct: 282 RVRVQERLLMKLCVEQAKMPKKNFVKFFTGNETNLDWFEAEKTSNKPYAEGLRMVEEDVQ 341

Query: 378 DIRSEIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRG 437
             RS++AA+  ETG+ I   + I + +  GE +AR+AKKEMVEANLRLVISIAKKYTNRG
Sbjct: 342 RCRSKLAAIEEETGLVIAAIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRG 401

Query: 438 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 497
           LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE
Sbjct: 402 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 461

Query: 498 TINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSH 557
           TINK+ R SRQML E+GREP+PEELAE++ MP +K+RKVLKIAKEPIS+ETPIGD+EDSH
Sbjct: 462 TINKLNRISRQMLQEMGREPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSH 521

Query: 558 LGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQ 617
           LGDFIED    LP+D+A   +L+  T  VLA LT RE +VLRMRFGI MNTDHTLEEVG+
Sbjct: 522 LGDFIEDTTLELPLDSATSESLKSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGK 581

Query: 618 QFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 651
           QF VTRERIRQIEAKALRKL+HPSRS  L+SFLD
Sbjct: 582 QFDVTRERIRQIEAKALRKLRHPSRSEILKSFLD 615