Pairwise Alignments

Query, 652 a.a., RNA polymerase sigma factor rpoD from Caulobacter crescentus NA1000 Δfur

Subject, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  473 bits (1217), Expect = e-137
 Identities = 274/637 (43%), Positives = 383/637 (60%), Gaps = 69/637 (10%)

Query: 29  VKKFIKQAKARGYVTMDELNKVLPSEEVSPDAIEDTLAMLSEMGVNVVEAEEDAEN---- 84
           +K  I + K  G++T DE+NK LP+E  +P+ IE+ + +  ++ + +V++E+D +     
Sbjct: 10  IKSLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLDIAIVDSEKDGKKISMS 69

Query: 85  ---------AEGGEVATRDENTTVIASDKPAAYDRTDDPVRMYLREMGSVELLSREGEIA 135
                    +EGG   + DE T   +S       R+ DPVRMYLREMGSV LL R+GE+ 
Sbjct: 70  PGESEEEAPSEGGLDLSDDEETVDYSS-------RSTDPVRMYLREMGSVPLLDRDGEVV 122

Query: 136 IAKRIEAGRDTMIRGLCESALTFEAIMVWREELGTGRILLREVIDLEGTYAAINGVAAQP 195
           IAK+IE G   ++  L E  +  E ++   E+L   RI L++V+              + 
Sbjct: 123 IAKKIEMGEQDVLYALVEVPVAVEELVNVGEDLKQNRIKLKDVV--------------KT 168

Query: 196 AAEDDEGPAEPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAMEGELREGVMAILDAIAS 255
             EDD     P +DE  +                             R+ V+ +L+ I +
Sbjct: 169 IEEDD-----PSEDEMNQ-----------------------------RQRVILLLEEIRT 194

Query: 256 EFEAFRKLQDKLVGSRLKGEDLSDADRKAYEGLSATIIQHLKTLKLNNNRIEALVEQLYA 315
            F+  RK+  KL         ++   R+        I+  L+ +KL    I+ ++E +  
Sbjct: 195 TFKKKRKVYSKLDECCTLERRVASVQREIMN-YKEDIVSRLRDIKLEKTLIDRIIETVED 253

Query: 316 INKRLIGLEGRLLRLADSYGISRGEFLKAYFGSELNPTWSEQVKAMGVRWTKFVENDSQS 375
             +++   +  L     S G ++ E    + G E          A      + + +  + 
Sbjct: 254 YVRQMHNCQRDLSAYILSTGKTQAEIQALFSGLEAREVSPVAASAALNMTVEELFSFKEM 313

Query: 376 VTDIRSEIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTN 435
           +      ++ L  +    ++D   ++  +++G   A +AK+E++ +NLRLV+SIAKKYTN
Sbjct: 314 ILGKIEILSRLQDKCCHNVNDLEEVLWRIKRGNSIAMRAKQELIRSNLRLVVSIAKKYTN 373

Query: 436 RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM 495
           RGLQFLDLIQEGNIGLMKAVDKFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHM
Sbjct: 374 RGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHM 433

Query: 496 IETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEED 555
           IETINK++RTSR ++ E+GR+PTPEE+AE++  P++KV+KVLKIAKEPISLETPIGDEED
Sbjct: 434 IETINKLIRTSRYLVQELGRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEED 493

Query: 556 SHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEV 615
           S LGDFIEDK A+ P +  + + L E    VLA LTPREE+VLR RFGIG  +DHTLEEV
Sbjct: 494 SSLGDFIEDKKAVAPAEEVVNTKLGEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEV 553

Query: 616 GQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS 652
           G+ F+VTRERIRQIEAKALRKL+HP RS+ LRS+ +S
Sbjct: 554 GKLFNVTRERIRQIEAKALRKLRHPVRSQTLRSYYES 590