Pairwise Alignments

Query, 305 a.a., site-specific tyrosine recombinase XerD from Caulobacter crescentus NA1000 Δfur

Subject, 303 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella loihica PV-4

 Score =  181 bits (460), Expect = 1e-50
 Identities = 113/299 (37%), Positives = 165/299 (55%), Gaps = 4/299 (1%)

Query: 3   QGEAWADAFLEMMAVERAAARNTLTAYGKDLEDARGFLSRSGHDLHDADAETIEAYFQDL 62
           Q +   + FL+ +   +  + +TL AY  DL     +L++ G  L       +  Y    
Sbjct: 9   QTDPLIEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQGSSLLSTSQAEVRDYLALR 68

Query: 63  GARGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIERLL 122
              G +  ++AR  S++R+FY+++L +     DP   +  PK  R LP  L   +++RLL
Sbjct: 69  VEHGFAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRLL 128

Query: 123 AAASAKDSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLAPL 182
           +  + +D  +  R   M+EL+YASGLR+SEL+ L L  ++     + + GKG KERL P 
Sbjct: 129 SEPNREDPVEA-RDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKERLVPF 187

Query: 183 NDAARAAVKAYLVERPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGIDRQ 242
            + A A ++ YL      L KG K S  +FPS+     +T +     ++  A  AGI   
Sbjct: 188 GEQAGAEIEDYLKAARFELLKG-KASDVVFPSKRGN-MMTRQTFWHRIKLYAQRAGI-AV 244

Query: 243 KVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHPLG 301
            +SPH LRHAFATHLL  GADLRV+Q LLGH+D++TTQIYTHVA   LA + Q  HP G
Sbjct: 245 HLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQAHHPRG 303