Pairwise Alignments

Query, 749 a.a., excinuclease ABC subunit B from Caulobacter crescentus NA1000 Δfur

Subject, 672 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella loihica PV-4

 Score =  761 bits (1965), Expect = 0.0
 Identities = 389/665 (58%), Positives = 491/665 (73%), Gaps = 9/665 (1%)

Query: 47  FKLVSDYQPAGDQPTAIAELVEGLQNGDQDQVLLGVTGSGKTFTMAQVIARTQRPALILA 106
           F LVS Y PAGDQP AI +LV+GL  G  +Q LLGVTGSGKTFT+A VI + QRP +I+A
Sbjct: 6   FDLVSQYAPAGDQPGAIKQLVDGLDAGLANQTLLGVTGSGKTFTIANVIKQMQRPTIIMA 65

Query: 107 PNKTLAAQLYSEMKSFFPENAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRH 166
           PNKTLAAQLY EMK FFP NAVEYFVSYYDYYQPEAYVP T+T+IEKD+S+N  I++MR 
Sbjct: 66  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHIEQMRL 125

Query: 167 SATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLEVGQRVDEKQLIADLVAQQYKRN 226
           SAT+A+LER DV+++ASVS IYG+G  E+Y  M   L  G  + +++++  L   QY RN
Sbjct: 126 SATKALLERRDVVLIASVSAIYGLGDPESYMKMLLHLRQGDFMGQREILQRLSELQYTRN 185

Query: 227 DQAFERGTFRRRGDTIEIFPAHYEDRAWRVTMFGDEVEALSEFDTLTGKKTADLEMIKVY 286
           D   +RGTFR RG+ I+IFPA  + +A RV +F DE++ LS FD LTG     +    VY
Sbjct: 186 DIELDRGTFRVRGEVIDIFPAESDKQAIRVELFDDEIDRLSLFDPLTGHILQRIARTTVY 245

Query: 287 ANSHHVTPRPTLRQAIIAIRQELKERLEWLTANGKLLEAQRLEQRTTFDLEMIETTGSCA 346
             +H+VTPR  +  A   I+QEL+ER ++L  N KL+EAQR+ +R  +D+EM+   G C+
Sbjct: 246 PKTHYVTPREKILAATEDIKQELRERKQYLLDNNKLIEAQRISERVQYDIEMMTELGYCS 305

Query: 347 GIENYSRYLSGRKTGEPPPTFFEYIPDNALLFTDESHQTVPQIGAMYKGDRNRKWTLAEY 406
           GIENYSRYLSGR+ GE PPT  +Y+P + LL  DESH TVPQIGAMYKGDR+RK  L EY
Sbjct: 306 GIENYSRYLSGRRPGEGPPTLLDYLPADGLLILDESHVTVPQIGAMYKGDRSRKMNLVEY 365

Query: 407 GFRLPSALDNRPLKFEEWDAMRPQSVHVSATPANWELERAGGVFAEQVIRPTGLIDPPVE 466
           GFRLPSALDNRPLKFEE++++ PQ++ VSATPA +EL+++ G  AEQV+RPTGL+DP +E
Sbjct: 366 GFRLPSALDNRPLKFEEFESLMPQTIFVSATPAQYELDKSDGEIAEQVVRPTGLLDPEIE 425

Query: 467 VRPVSKDGASQVDDVVDEIRQTIQKGYRTLVTVLTKKMAEDLTEYLTEQGIRVRYMHSDV 526
           VRPV    A QVDD++ E  + +    R LVT LTK+MAEDLTEYL E G++VRY+HSD+
Sbjct: 426 VRPV----AIQVDDLLSEANKRVAVNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSDI 481

Query: 527 DTIERIEIIRDLRLGHFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIG 586
           DT+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRSE SLIQTIG
Sbjct: 482 DTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIG 541

Query: 587 RAARNVDGKVILYADRVTGSMERAMAETARRREKQHAYNLEHGITPESVKRDIKDILN-S 645
           RAARNV+GKVILYAD +T SM +A+ ET RRREKQ  +NL +GITP+ V + I D+++  
Sbjct: 542 RAARNVNGKVILYADNMTKSMAKAIGETERRREKQREFNLANGITPKGVSKKIADVMDLG 601

Query: 646 PYERGDRVLVP----MGMSETDDRPFSGDNFKAALKDLEAKMREAAANLEFETAARLRDE 701
            Y      ++P    +  S T        +    + +LE +M + A +LEFE AA LRDE
Sbjct: 602 DYNEHTAKVLPKYQKVAESRTTYAKQDASSLSHQIDELEKRMHQHARDLEFEQAAALRDE 661

Query: 702 IKRMK 706
           +  ++
Sbjct: 662 VLALR 666