Pairwise Alignments

Query, 371 a.a., ABC transporter permease protein from Caulobacter crescentus NA1000 Δfur

Subject, 261 a.a., conserved hypothetical protein TIGR00056 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  115 bits (287), Expect = 2e-30
 Identities = 69/209 (33%), Positives = 116/209 (55%), Gaps = 21/209 (10%)

Query: 162 GLDAMPIIATTTFFIGAVVALLGANMLTDFGAQVYAVELIGISVMREFNILITAILLAGR 221
           G+ +M II  +  FIG V+AL G N+L  FG +     ++ +S++RE   ++TA+L AGR
Sbjct: 53  GVQSMVIIVVSGLFIGMVLALQGYNILVGFGTEESLGPMVALSLLRELGPVVTALLFAGR 112

Query: 222 SASSFAAEIGSMKMNQEIDAMQVMGVDPYEALVLPRFAALLLTIPLLTFVATIAGLAGGI 281
           + S+  AEIG MK  +++ ++++M +DP   ++ PRF A ++++PLL  + T  G+ GG 
Sbjct: 113 AGSALTAEIGLMKSTEQLSSLEMMAIDPLRQIIAPRFWAGVISMPLLALMFTAVGIYGGH 172

Query: 282 LV-----------VWSVLDLSPTFFLQRIVDYVGATHFWIGLSKAPVMAMVIAAIGCRQG 330
           LV            WS+L  S   + Q IV+          L K+ V A+V+  I   +G
Sbjct: 173 LVGVEWKGIDSGAFWSILQAS-VEWRQDIVNC---------LIKSGVFAVVVTWIALYRG 222

Query: 331 MEVGKDIESLGRRVTAAVVHAIFAIILID 359
            +V  + E + R  T+ VV +  A++ +D
Sbjct: 223 YQVIPNPEGISRATTSTVVQSSLAVLALD 251