Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor Mfd from Caulobacter crescentus NA1000 Δfur

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella loihica PV-4

 Score =  745 bits (1924), Expect = 0.0
 Identities = 448/1110 (40%), Positives = 638/1110 (57%), Gaps = 42/1110 (3%)

Query: 26   ALVMADIARARGGLTAFVARDTARAGAFIDALKFF-APE-IEAVLFPSWDCLPYDRIGPS 83
            A+ +A +      +T  V  DT  A      L +  AP+ I  +LFP  + LPYD   P 
Sbjct: 30   AISLAKLCEQYSSMTLVVTPDTPSALRLEAELGYLLAPKSIPVMLFPDRETLPYDSFSPH 89

Query: 84   SGVSATRMATLSRLARGLGESKAAILVIAAPALLQRVPTKEVLLRASYAAKVGANVDIKD 143
              + + R+ TLSR+    G S   ++++    L+ ++P +  L         G N  ++ 
Sbjct: 90   QDLVSQRLETLSRIPSA-GHS---LVIVPMSTLMVKLPPQSFLTGNVLLLSKGDNYPLEA 145

Query: 144  LERYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAAEEPVRLDLFGDTLESIRAFDPETQ 203
            +       GY     V E GEFA+RG +ID++P  A+ P R++LF D +ESIR FDPETQ
Sbjct: 146  VRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMGAQSPYRIELFDDEVESIREFDPETQ 205

Query: 204  RSTKQLKEIDLLPVSEALLDADGISRFRKGYVAEFGA--PGDDALYAAVSEGGRRAGLEH 261
            RS+ +++ I LLP  E   +   I  FR+ Y  +F       +++Y  VS     AG+E 
Sbjct: 206  RSSGEIESIRLLPAKEFPTNDAAIEGFRQRYRRQFEVVVKEPESIYQMVSRKVMPAGIES 265

Query: 262  WLPLFYERMATLFDYLPAGALIGVDNQATEARDERLAMIQDAYDARASADRKSAYRPLAP 321
            +LPLF++  A+LFDYLP    +        A    L  I   Y+ R    R    RPL P
Sbjct: 266  YLPLFFDETASLFDYLPGECQLVQVGDLENAAKHHLQEINQRYENR----RVDPLRPLLP 321

Query: 322  -EALYLTAEEWERELSDRTHRRFTPFQPQGLDVIDLGAKLGRVFAAERA-QDSVNLFEAT 379
             + LYL  E+                +  G  V      L  + A  +  Q  ++L    
Sbjct: 322  PKDLYLLTEQVFEAFKQLPRFLIKGNEATGTCVEAQLEALPNIAANHKLKQPLISL---- 377

Query: 380  ADHAKALAAQGKRVLFASWSEGSSERLGTMLADHGLKKIPYAGYWQAAKANDPKVPQRVV 439
                K  A  G  +LF   SEG  E L  +LA   +K  P       + ++ P+    +V
Sbjct: 378  ----KEFANGGTPILFCVESEGRREALLELLAKIEIK--PALLDHLDSFSHKPQPFGLIV 431

Query: 440  LPLDHGF-----ETDSLAVISETDILGDRLARPRKKRRAANFLAEA-----SALTPGDLV 489
             PL  G      +  S A++ ET++ G R+A+ R++ +      +A     + L  G  +
Sbjct: 432  APLSQGAIYHPKKGPSWALVCETELFGQRIAQQRRRDKQRQVSQDALIKDLAELKVGQPI 491

Query: 490  VHIDHGIGRYEGLKTLDVQGAPHDCLDLLYGGEAKLYLPVENIDLLTRYGAADAENVQLD 549
            VH+DHG+  Y+GL+TLD  G   + L L Y G  KLY+PV +++L+++Y     +  QL+
Sbjct: 492  VHLDHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVASLNLISQYSVGADDAPQLN 551

Query: 550  KLGGAAWQGRKAKAKERLRVMAEGLIQIAAARQLKTVEETDPPSGVFDEFCARFPYEETD 609
            KLG  +W   K KA E++R +A  L+ + A RQ +  E        + +F   FP+EET 
Sbjct: 552  KLGNESWTKAKRKAIEKIRDVAAELLDVYARRQARPGEACRLDREEYAQFAGSFPFEETV 611

Query: 610  DQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCPTTLLAR 669
            DQ +AI  VL D+ S   MDRL+CGDVGFGKTEVA+RAAFV    GKQVAI+ PTTLLA+
Sbjct: 612  DQETAIDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQ 671

Query: 670  QHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETREGLANGQFEIVVGTHAILSKQVSFKDL 729
            QHY+ FKDRF  WP+K+  +SR  T KE     + L  GQ +IV+GTH +L  +  F++L
Sbjct: 672  QHYENFKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVIGTHKLLQSEAKFENL 731

Query: 730  GLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREMSIIATPPVDR 789
            GL+I+DEE  FGV+ KEK+K LRA++ +LTLTATPIPRTL MA+SG+R++SIIATPP  R
Sbjct: 732  GLLIIDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKR 791

Query: 790  LAVRTYISPFDPVTLREALLREKYRGGQSYYVVPRIKDLEDIEKFLRTQVPEVKFVVGHG 849
            LAV+T++  +D  T+REALLRE  RGGQ Y++   ++ +E   + +   +PE + V  HG
Sbjct: 792  LAVKTFVREYDDATVREALLREILRGGQVYFLHNSVETIEKRAREIEALLPEARVVTAHG 851

Query: 850  QMAATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANTLIVHRADMFGLAQLYQIRGRV 909
            QM    LE VM+ FY  +Y+VL+ TTI+E+G+D+PSANT+I+ RAD FGLAQL+Q+RGRV
Sbjct: 852  QMRERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERADNFGLAQLHQLRGRV 911

Query: 910  GRSKARAYAYLTTPVEKSLTPSAEKRLQVLQSLDSLGAGFQLASHDLDQRGGGNLLGDEQ 969
            GRS  +AYAYL  P  K +T  A KRL+ + +L+ LGAGF LA+ DL+ RG G LLGDEQ
Sbjct: 912  GRSHHQAYAYLMMPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQDLEIRGAGELLGDEQ 971

Query: 970  SGHIKEIGVELYQQMLEDAVAELRQRQGQEALLED--RGWSPQINTGAAVMIPDDYVPDL 1027
            SGHI +IG  LY +MLEDAV  L  ++G+E  L+   RG   +I+     ++P+DYV D+
Sbjct: 972  SGHISKIGFTLYMEMLEDAVKSL--KEGKEPSLDQMLRG-QCEIDLRIPALLPEDYVGDV 1028

Query: 1028 NVRLSLYRRLSEAEQAADREALAAEMIDRFGPLPPETDSLLKVVAIKGLCREANVAKIDV 1087
            N+RLSLY+R++    A   + L  E+IDRFG LP  T +L++V   K       +AKI++
Sbjct: 1029 NIRLSLYKRIANCATAQALDELKVELIDRFGLLPQATKNLMEVSLFKHQATALGIAKIEM 1088

Query: 1088 GPKGAVASFRGDSYANP---LGLMQHVAKN 1114
              KG    F  D   +P   +GL+Q   +N
Sbjct: 1089 HAKGGSLEFNNDHCVDPGFIIGLLQSQPQN 1118