Pairwise Alignments

Query, 966 a.a., TonB-dependent receptor from Caulobacter crescentus NA1000 Δfur

Subject, 713 a.a., TonB-dependent receptor (RefSeq) from Shewanella loihica PV-4

 Score = 90.1 bits (222), Expect = 5e-22
 Identities = 70/253 (27%), Positives = 121/253 (47%), Gaps = 7/253 (2%)

Query: 62  TLRRAALLAGASTLSLVLALPAAAQTAPAPQDGVTIDELVVTAQRREEKLQDVPIAVSAF 121
           TL+  + +A A   +L      A+ T PA  +   ++ +VVT+  R+  L  +P ++S  
Sbjct: 3   TLKSYSPIALAVAAALTHTSLMASDTPPANDE---MEVIVVTSDFRQSSLDKMPSSISVI 59

Query: 122 SNDMLSRQKIDGGPNLQLAIPNVTFAKSFYSGYNFQIRGIGTKQTAVTG-DSSTGVHFNG 180
               +  +      ++   I N  ++        FQIRG+G ++      +SS G   + 
Sbjct: 60  DQQQIEDEGAQHFEDVLNGIANFNWSGGSSRAKYFQIRGVGEQEEYQGAPNSSVGYIIDD 119

Query: 181 APLTSNRLFEAEFFDVERVEVLRGPQGTLYGRNATGGVVNVLSAKPTGEFEGMVRAEVSN 240
             ++   +  +  +D+++VEVLRGPQGT YG NA  G++ + S  PT  FE     ++ +
Sbjct: 120 IDMSGLGMISS-MYDLQQVEVLRGPQGTRYGANALAGLIYLKSNDPTSVFEHGAELQLGD 178

Query: 241 YDGRKLRGMVNIPLV-ADKLDLRLAGATLNRGGFVDNLGTG-DKVDDRDLYSFRASLRWR 298
            + R   G  + PL  + KL  R++     + G+ DNL  G D  + RD ++ R  LRW 
Sbjct: 179 DNLRTYSGFSSGPLTDSGKLLYRVSLQQHEQNGYRDNLYLGRDDTNGRDEFTGRIKLRWY 238

Query: 299 PTSTIDANFVWQH 311
            T  + A+    H
Sbjct: 239 ATDDLVADLSLMH 251



 Score = 46.2 bits (108), Expect = 8e-09
 Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 17/144 (11%)

Query: 654 YAFYSRGYKGGGPNNIGQVATL-RPFYEPEYVNAFEVGTKNTLLGGALVLNGSAFFYDYK 712
           YA  +RGYK GG N    V+   +  ++ E +  +E+G K+  L G    + S F+ D +
Sbjct: 466 YARIARGYKAGGFNMSLPVSLSDKKEFQAETLYNYELGLKSEWLDGDATTHFSLFYMDRR 525

Query: 713 GYQISKFVNR-------ISVTENIDAEIK-GVELEAVWEPVKRFRMNGTVGLLDT----- 759
             Q+S            I   EN  +    G ELEA W      ++ GT+G L+T     
Sbjct: 526 DQQVSASQQNPDEPQKFILYVENAGSSHNYGAELEANWYATDNLKLYGTLGWLETAYGDY 585

Query: 760 --KIKNGESIDPMNR-TGGNPNLT 780
             + K G  +D   R    +PNLT
Sbjct: 586 AYQDKYGGLVDLTGRELAHSPNLT 609



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 842 GVAAKLKGNELPGSPNWTASIGAQYSFDVLDGW 874
           G    L G EL  SPN T S GA Y  D+  GW
Sbjct: 592 GGLVDLTGRELAHSPNLTYSAGATYRSDL--GW 622