Pairwise Alignments

Query, 278 a.a., 23S rRNA Gm2251 methyltransferase from Caulobacter crescentus NA1000 Δfur

Subject, 246 a.a., RNA methyltransferase, TrmH family, group 3 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  129 bits (324), Expect = 6e-35
 Identities = 84/245 (34%), Positives = 130/245 (53%), Gaps = 15/245 (6%)

Query: 38  KDWIWGTHAVEAALANPRRPAPKRLLATPDRAKRLAPHLQKL----TCLQVMEGQEIAKQ 93
           +D I+G HAVEA L +      +  L      +RL P +++     T +QV   +++  +
Sbjct: 4   QDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTS-RKVLDE 62

Query: 94  LPQGAVHQGLALKIDEPEPLT-------IAELGTPAKGFLVMLDQITDPQNIGAIFRSAA 146
             +   HQG+  ++   + L        +A+   P   FL++LD +TDP N+GA  R+A 
Sbjct: 63  KAESTQHQGIVARVKAAKILAEHDLDELLAKTDLP---FLLILDGVTDPHNLGACLRNAD 119

Query: 147 AFGAKGVILQDRHAPALSGVLAKTAVGAVDKAPYARVVNLSRALEELADLGWRAVALAGE 206
           A G +G+I+   ++  L+ V++K A GA +  P  +V NL+R +  L + G   V  AGE
Sbjct: 120 AAGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGE 179

Query: 207 AEQSLDAVLDSQPTVLVLGSEGEGVRRLVAEHCDALGKIPMPGGFESLNVSAAAAIALYE 266
           A+  L       P  + +G+EG+G+RRL  E CD L  IPM G   SLNVS A  I L+E
Sbjct: 180 ADCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICLFE 239

Query: 267 ASKVR 271
           A + R
Sbjct: 240 AVRQR 244