Pairwise Alignments

Query, 977 a.a., TonB-dependent outer membrane receptor from Caulobacter crescentus NA1000 Δfur

Subject, 891 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  208 bits (529), Expect = 1e-57
 Identities = 245/1005 (24%), Positives = 408/1005 (40%), Gaps = 178/1005 (17%)

Query: 19  VSAALPAMAQTAQPAQAPATEVEAVVVTGSRIKRNEFNSPDPVQVVTAEQGRLQGIGSTG 78
           VS ++  +A  A+     A +VE + VTGSRI+R +  +  PV V++  +    G  +  
Sbjct: 19  VSTSIAPIAMAAEQGAVDANKVERIAVTGSRIQRTDMETSSPVTVISRAEIDASGTATVS 78

Query: 79  ALLQSATIAS-GSPQVNAAISSAFITDGGPGAETISLRGLGANRTLVLLNGRRAGPAGVR 137
             +++ +  S GS +  +   S     G     T+S+RGLG+ RTLVL++GRR G +   
Sbjct: 79  DFVRNLSQNSFGSFREASGFGS-----GQSSQSTVSMRGLGSQRTLVLIDGRRMGSSVAF 133

Query: 138 GGVSAFDLNVLPMAITERIDILKDGASSIYGSDAVAGVVNIITKRNTDGVDLDMFYSQPQ 197
           GG +  +LNV+PMA  ERI++L+DGAS++YGSDAVAGV+NIITK+  +GV+ D      Q
Sbjct: 134 GGGTQ-NLNVVPMAAIERIEVLRDGASAVYGSDAVAGVINIITKKEFEGVEFDADLGATQ 192

Query: 198 KQGGEEFRASAAWAKSFDRGFFSMAYEYNKRAEQTKGQRPFTSCGRQYIFDAQGKRKDTI 257
             G E+  A   +  + ++     + EY  RA                ++DA     DT+
Sbjct: 193 HGGAEKSNARFTFGVNSEKTNMVASVEYYNRAA---------------LYDADRDYSDTL 237

Query: 258 DPRTGQTQCRDLLYDQIWLYDFSFAGLDGKLQYDYTGKIAGLIPRYPAGEQANYPGMPAG 317
               G            W    S+     K   D  GK  G   +Y     A+       
Sbjct: 238 YSAHG------------WPGTGSYVD-KTKPILDADGKPTG---KYQTVSFADKRCGEGN 281

Query: 318 FFVVGHSGDPANPDMGVLDYNSPFNLAASLTPRTERSTVFAQGAYEITDSIEAYGEILLN 377
             V G  G+          YN+    A       ER + F +  +E+T+ I     ++++
Sbjct: 282 SLVTGPDGNQ------TCSYNAAAESATMAA--QERFSTFVKVDHELTEDINWTNRLMMS 333

Query: 378 R------RATKTNDY--RQFW----SYFYTGDIDPFS-----------------AGFTGD 408
           R       A   N Y  +  W    S  Y   ++ +                   G T +
Sbjct: 334 RVWTEGQYAAAPNSYSPKLRWTKENSDIYLATVNKYGNDYLKNQLKYDAKGNLIGGDTIN 393

Query: 409 FILSPTPVTNRNRSGQKVDYQRYVGGLRGDFGNVEFLKGWDWDVFAQYSHN--------- 459
             +  TP+  R  + +  D    +  L    G+ + L G  W++ AQ+  +         
Sbjct: 394 LKMRTTPLGPRVTNVEDTD----INFLTALEGHSDILGGTAWNLGAQWIRSDVTTIQTGL 449

Query: 460 -KGVYSQDVILKDSVDIGAFRTGSCKGQTTPISKKACVDVSWVTPDFLAGKYTAAEEAFL 518
                 Q+ +    +D  A  TG  +G      ++A             G +T   + + 
Sbjct: 450 ANANMIQEFLDNGKLDYFAAGTGYVEGSNELQLQEAA----------HTGIFTGRVQTYG 499

Query: 519 FDSEAGETTYKQLVLEGSMSGDLFRLPAGPVGAAVGFHYRKDSINDVPGPITLAGNIWNS 578
            D  A              S DLF LPAG V  A+GF + +   +      +  GNI   
Sbjct: 500 IDGGA--------------SFDLFELPAGTVPLAIGFEFMRTEYDKTNDAGSNLGNI--- 542

Query: 579 SAAGITKGDDLAREVYGELSIPVLRDVFLAERVDLSVSGRHTKINSYGEQDTYKLGLNWQ 638
              G + GD++  +    LS        + + +DL +S R    + +G     K+GL+++
Sbjct: 543 --IGTSGGDNIQGKSREVLSFSAETMFPIIDGLDLELSARFDDYSDFGSTFNPKVGLSYR 600

Query: 639 IIPSVRLRATQGTSFRAPALFELYKNAETSFSGQRSIDPCIRWATNLAQGLITQKLANNC 698
            + S+ +RA+ GT FRAP   +LY  A  ++           WA +  Q           
Sbjct: 601 PVDSLLVRASYGTGFRAPTFDDLYATASETY----------LWARDWTQ----------- 639

Query: 699 RAAGVPGTHSGSGASATITSSGGKGNLEAETSKAVTYGVIWSPKFADLQVAVDYFDIKID 758
                PG  +G           G  +LE E S +++ G++W+   A L   + Y+DI+ID
Sbjct: 640 ----CPGNPNGCVQEQFKAQYQGNDDLEPEESTSLSLGLVWNVTDA-LDFELSYYDIQID 694

Query: 759 GEIRRLGAANIVRGCYTSDNFPNDSLCKLFTRNASNLISTVTNNYINIAEQKNRGIDLTV 818
             I  +   +++      D F   ++  LF    +  I  V    +N+ E K  GID  +
Sbjct: 695 NVISTMSTQDVLN--QERDGFDMSNV--LFRDPVTGKIDYVVLQKMNLGELKTSGIDFNI 750

Query: 819 SY-----GQQLPWDVKMNVDLQSTWQLKDTIALFADTVEDNNGFVGDPDWTGRLNFRFTK 873
            Y       +  +  + N  L  +W+ KD        +ED  G VG P +   L+  +T+
Sbjct: 751 RYLLETSVGEFRFGAETNYVL--SWESKDGP---YSELEDIIGDVGQPQFRANLSTTWTQ 805

Query: 874 NDWTAFWGINMIGKASDAETEATQNAAGTTFYKVHTEFTAYHNISLQKKFDGFTILGGVS 933
            +W A    ++  + +D++ +      G T  +   +  A +N+    K     +  G+ 
Sbjct: 806 GEWEA----SLFARYTDSQEDEDY---GKTPSQWLLDAQAGYNLPWNAK-----VNVGIR 853

Query: 934 NVFNETPPA-VTLGQGEYDTVGGSVFASQYDYLGRRVFLNISTHF 977
           N+ +E P     LG   YDT         YD +GR  ++  +  F
Sbjct: 854 NLLDEEPAMNENLGFPGYDTY-------LYDPIGREYYVRYNQKF 891