Pairwise Alignments

Query, 250 a.a., integral membrane protein from Caulobacter crescentus NA1000

Subject, 234 a.a., predicted inner membrane protein (NCBI) from Escherichia coli BW25113

 Score =  157 bits (397), Expect = 2e-43
 Identities = 90/228 (39%), Positives = 145/228 (63%), Gaps = 9/228 (3%)

Query: 23  AGLRKFMLGVYNKVALGLVVSGALAYATSSVPAVRDLLFVVQGGRLAGVTPLYMVVAFAP 82
           AGL+ +M  VY  + +GL+++  +A+  ++  AV +LLF  +      V  + +++A   
Sbjct: 15  AGLQTYMAQVYGWMTVGLLLTAFVAWYAANSAAVMELLFTNR------VFLIGLIIAQLA 68

Query: 83  LVLMLIAGFAMRNPKPETAGALYWTIVSLIGASLGSVMLRYTGESVAATFFVTATAFGGL 142
           LV++L A     +    T   L+    +L G +L S+ + YT  S+A+TF VTA  FG +
Sbjct: 69  LVIVLSAMIQKLSAGVTTM--LFMLYSALTGLTLSSIFIVYTAASIASTFVVTAGMFGAM 126

Query: 143 SLFGYTTKKDLTGFGSFLMMGVIGLIVASIVSIFLKSPALLFAINVLGVLIFSGLIAYDT 202
           SL+GYTTK+DL+GFG+ L M +IG+++AS+V+ +LKS AL++A+  +GV++F GL AYDT
Sbjct: 127 SLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFWLKSEALMWAVTYIGVIVFVGLTAYDT 186

Query: 203 QRLKMTYYEMG-GDRASMAVATNFGALSLYINFINLFQFLLSFFGGNR 249
           Q+LK    ++   D +++   +  GAL+LY++FINLF  LL  FG  R
Sbjct: 187 QKLKNMGEQIDTRDTSNLRKYSILGALTLYLDFINLFLMLLRIFGNRR 234