Pairwise Alignments

Query, 305 a.a., site-specific tyrosine recombinase XerD from Caulobacter crescentus NA1000

Subject, 298 a.a., Tyrosine recombinase XerD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  209 bits (533), Expect = 5e-59
 Identities = 126/299 (42%), Positives = 179/299 (59%), Gaps = 3/299 (1%)

Query: 1   MSQGEAWADAFLEMMAVERAAARNTLTAYGKDLEDARGFLSRSGHDLHDADAETIEAYFQ 60
           M Q  A  + FL+ + +ER  A NTL+AY +DL     +L   G  L  A A+ ++    
Sbjct: 1   MEQDLARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLA 60

Query: 61  DLGARGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIER 120
           +    G    ++AR  SA+R+F++ +  E +R DDPS ++A+PK  + LPK L   ++ER
Sbjct: 61  ERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVER 120

Query: 121 LLAAASAKDSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLA 180
           LL A    D    LR   M+E++YA+GLR+SEL+ L +  ++     + V GKG KERL 
Sbjct: 121 LLQAPLI-DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179

Query: 181 PLNDAARAAVKAYLVERPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGID 240
           PL + A   ++ YL     +L  G      LFPS+ A  ++T +     ++  A+ AGID
Sbjct: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQ-QMTRQTFWHRIKHYAVLAGID 237

Query: 241 RQKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHP 299
            +K+SPHVLRHAFATHLL  GADLRV+Q LLGH+D++TTQIYTHVA E L  + Q  HP
Sbjct: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296