Pairwise Alignments

Query, 305 a.a., site-specific tyrosine recombinase XerD from Caulobacter crescentus NA1000

Subject, 297 a.a., site-specific tyrosine recombinase XerD from Erwinia tracheiphila SCR3

 Score =  196 bits (498), Expect = 6e-55
 Identities = 120/291 (41%), Positives = 175/291 (60%), Gaps = 3/291 (1%)

Query: 9   DAFLEMMAVERAAARNTLTAYGKDLEDARGFLSRSGHDLHDADAETIEAYFQDLGARGLS 68
           + FL+ + VER  A NTL +Y  DL     +L+    +L    +  ++A+  +    G  
Sbjct: 8   EQFLDAIWVERNLAENTLASYRLDLRTLLDWLAHHNRNLLLVASAELQAFLAERLEGGYK 67

Query: 69  PATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIERLLAAASAK 128
             ++AR  SA+R+ ++++  E  R DDP+  +A+PK  + LPK L   +IERLL A S +
Sbjct: 68  ATSSARLLSAMRRLFQYLYREKLREDDPTATLASPKLPQRLPKDLSEAQIERLLQAPSTE 127

Query: 129 DSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLAPLNDAARA 188
              + LR   M+EL+YA+GLR++EL++L L  L+     + V GKG KERL PL + A  
Sbjct: 128 QPLE-LRDKAMLELLYATGLRVTELVSLTLNNLSLRQGVVRVIGKGNKERLVPLGEEAVY 186

Query: 189 AVKAYLVERPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGIDRQKVSPHV 248
            ++ ++     +L  GQ     LFPS  A  ++T +     ++  A  AGID +K+SPHV
Sbjct: 187 WLEQFIEYGRPWLLNGQTLDV-LFPSNRAQ-QMTRQTFWHRIKHYATLAGIDSEKLSPHV 244

Query: 249 LRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHP 299
           LRHAFATHLL  GADLRV+Q LLGH+D++TTQIYT+VA E L  + Q  HP
Sbjct: 245 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTYVATERLRQLHQLHHP 295