Pairwise Alignments

Query, 342 a.a., membrane permease from Caulobacter crescentus NA1000

Subject, 349 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 74/322 (22%), Positives = 149/322 (46%), Gaps = 26/322 (8%)

Query: 3   KTGASFLVNFA----VAAGLLYVFSAVLWPFTLALVLAILITSLSDRVVRLLPKARPW-- 56
           KTG   L+  A    + AG+ +  + ++    LAL  AI++  L    +R   + RP   
Sbjct: 8   KTGMHILLKLASLVVILAGI-HAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQ-RPVAI 65

Query: 57  ------MVFAITAVIVGGIIVASMAVVIGGGARIVERMPAMMARIDQLLALIHLPGGGVM 110
                 M+ A+TA++  G++ AS    I    +  + +   + ++ ++L  ++L     M
Sbjct: 66  TIVVVVMLIALTALV--GVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLH----M 119

Query: 111 SLAALAQKVE---LGPLADGLLTSVQNASAGLGLTLIFLFFLLLSKPMIEKRIDQIVASR 167
           S   + Q+++   +      L+T +  A A + L ++ + F+L     +  ++    A  
Sbjct: 120 SPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMR--FALN 177

Query: 168 GGQGLAMVLERSFSGVERYMYVQSITGLMIAFGSWVVMRAVGLESALFWSLVIFLFAYLP 227
             Q     L R+  GV  Y+ ++++  L      W+ +  +G++ AL W+++ FL  Y+P
Sbjct: 178 NPQIHIAGLHRALKGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAFLLNYVP 237

Query: 228 VLGVLAGSVGPTLFALLQFPTLTPAIAIFVGIQVVSSIVGNLVLPKMQADSQNIDPAASL 287
            +G +  +V P +  LL F  +   I +     VV  ++GN++ P+M      +      
Sbjct: 238 NIGAVISAVPPMIQVLL-FNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMSTMVVF 296

Query: 288 IAVGMWTVLWGVPGAFLAIPLT 309
           +++ +W  L G  G  L++PLT
Sbjct: 297 LSLLIWGWLLGPVGMLLSVPLT 318