Pairwise Alignments

Query, 342 a.a., membrane permease from Caulobacter crescentus NA1000

Subject, 344 a.a., predicted inner membrane protein (NCBI) from Escherichia coli BW25113

 Score =  104 bits (260), Expect = 3e-27
 Identities = 81/318 (25%), Positives = 158/318 (49%), Gaps = 23/318 (7%)

Query: 25  VLWPFTLALVLAILITSLSDRVVRLLPKARPWMVFAITAV-IVGGIIVASMAVVIG--GG 81
           ++ PF LAL +A+++  L   +VR       W V  + AV I+  IIV +M +++   G 
Sbjct: 33  IIVPFILALFIAVILNPLVQHMVR-------WRVPRVLAVSILMTIIVMAMVLLLAYLGS 85

Query: 82  A--RIVERMP----AMMARIDQLLALIHLPGGGVMSLAALAQKVELGP---LADGLLTSV 132
           A   +   +P    ++M  +  L  L+   G  V S+  LA  ++      L   LLT +
Sbjct: 86  ALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDV-SVDQLAHYIDPNAAMTLLTNLLTQL 144

Query: 133 QNASAGLGLTLIFLFFLLLSKPMIEKRIDQIVASRGGQGLAMVLERSFSGVERYMYVQSI 192
            NA + + L L+ + F+LL  P +  +  Q++A R  +G+A + +R+   V  Y+ +++ 
Sbjct: 145 SNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA-RPVEGMAAI-QRAIDSVSHYLVLKTA 202

Query: 193 TGLMIAFGSWVVMRAVGLESALFWSLVIFLFAYLPVLGVLAGSVGPTLFALLQFPTLTPA 252
             ++    +W ++ A+ +  A  W L+ F   Y+P +G +  ++ P +  +L F     A
Sbjct: 203 ISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAI-PPIAQVLVFNGFYEA 261

Query: 253 IAIFVGIQVVSSIVGNLVLPKMQADSQNIDPAASLIAVGMWTVLWGVPGAFLAIPLTLAL 312
           + +  G  +++ + GN++ P++      +      +++  W  L G  G  L++PLT+ +
Sbjct: 262 LLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIV 321

Query: 313 MYALAQYDDLRWLAVLIS 330
             AL Q    + +AVL+S
Sbjct: 322 KIALEQTAGGQSIAVLLS 339