Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 192 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  198 bits (503), Expect = 6e-56
 Identities = 107/177 (60%), Positives = 130/177 (73%), Gaps = 2/177 (1%)

Query: 6   NDPDDALLAGVGRGDPSAVRTLLDRRLPRILALARRMLNDAGEAEDVAQETFLRAWKQAR 65
           +DPD  LL  +G  DP+AV  ++ R+LPR+LALA R+L DA EA+DVAQE+FLR W+QA 
Sbjct: 4   SDPDVELLVRIGNNDPAAVNEMVTRKLPRLLALASRILGDADEAKDVAQESFLRIWRQAA 63

Query: 66  SWKPGGARFDTWLHRVALNLCYDRLRRR--REVVTDAPPEQIDPGPAPDAGLMQSELSRR 123
           SW+ G ARFDTWLHRVALNLC+DRLRRR  R +  +   E  D     D  L  ++ S R
Sbjct: 64  SWRSGEARFDTWLHRVALNLCHDRLRRRKQRPLSEEEVLELADSAAPLDEQLESADRSAR 123

Query: 124 VEAALAALPARQREAIVLCHHQGLGNIEAAGLMAISVEALESLLSRGRRALKASLAD 180
           + AALAALP RQREAIVL ++Q L NI+AA LM ISVEALESLLSR RR L++ LAD
Sbjct: 124 MAAALAALPERQREAIVLQYYQELSNIDAAALMNISVEALESLLSRARRQLRSQLAD 180