Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

 Score = 78.6 bits (192), Expect = 6e-20
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 12/186 (6%)

Query: 7   DPDDALLAGVGRGDPSAVRTLLDRRLPRILALARRMLNDAGEAEDVAQETFLRAWKQARS 66
           + D  L+  V RGD  A   L+ +   +IL L  R ++D  EA+DVAQE F++A++   +
Sbjct: 5   EEDQQLVERVQRGDRRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGN 64

Query: 67  WKPGGARFDTWLHRVALNLCYDRL--RRRREVVTDAPPEQI-----DPG----PAPDAGL 115
           ++ G + F TWL+R+A+N   + L  R RR   +D   E       D G     +P+  L
Sbjct: 65  FR-GDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERSL 123

Query: 116 MQSELSRRVEAALAALPARQREAIVLCHHQGLGNIEAAGLMAISVEALESLLSRGRRALK 175
           ++ E+   V   +  LP   R A+ L    GL   + A +M   V  + S + R R A+ 
Sbjct: 124 LRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAID 183

Query: 176 ASLADL 181
            +L  L
Sbjct: 184 KALQPL 189