Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 221 a.a., RNA polymerase sigma factor from Magnetospirillum magneticum AMB-1

 Score =  129 bits (325), Expect = 3e-35
 Identities = 69/174 (39%), Positives = 107/174 (61%), Gaps = 1/174 (0%)

Query: 9   DDALLAGVGRGDPSAVRTLLDRRLPRILALARRMLNDAGEAEDVAQETFLRAWKQARSWK 68
           DD LL  + +GD  + + L++R +  +LAL+ R+L +  +A+++ QE FL+ W  A  W+
Sbjct: 39  DDDLLRAIAQGDRRSFQRLMERHVRAMLALSTRVLRNPDDADEIVQEAFLKVWTLASGWQ 98

Query: 69  PGG-ARFDTWLHRVALNLCYDRLRRRREVVTDAPPEQIDPGPAPDAGLMQSELSRRVEAA 127
               A+F TWL+RV LN   DRLRR R V  +   E +DP P     ++  +  R V  A
Sbjct: 99  SDREAKFSTWLYRVVLNASLDRLRRARFVAEEEADEPVDPAPGGLDRVVARQRERLVSTA 158

Query: 128 LAALPARQREAIVLCHHQGLGNIEAAGLMAISVEALESLLSRGRRALKASLADL 181
           +A +PARQREA+ L +   L   EAA ++ +S+ A+E+LL RG+R+L+ +LA L
Sbjct: 159 MAEMPARQREALSLYYFSDLTAPEAARVLDLSLSAMEALLVRGKRSLRTALARL 212