Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 180 a.a., RNA polymerase sigma factor from Agrobacterium fabrum C58

 Score =  191 bits (484), Expect = 8e-54
 Identities = 98/173 (56%), Positives = 124/173 (71%)

Query: 6   NDPDDALLAGVGRGDPSAVRTLLDRRLPRILALARRMLNDAGEAEDVAQETFLRAWKQAR 65
           +DPD  L+A V  GD  A+RTL++ +LPRI+ALA RML D  EAEDVAQETFLR WK A 
Sbjct: 3   SDPDAKLVADVAAGDIRAMRTLVEAKLPRIMALATRMLGDPVEAEDVAQETFLRIWKHAG 62

Query: 66  SWKPGGARFDTWLHRVALNLCYDRLRRRREVVTDAPPEQIDPGPAPDAGLMQSELSRRVE 125
           +W+ G ARFDTW+HRVALNLCYDRLR+RRE+    P +  D   + + G    +    V 
Sbjct: 63  TWRQGAARFDTWIHRVALNLCYDRLRKRREISVAQPSDLADARTSSENGGADIDEGEAVG 122

Query: 126 AALAALPARQREAIVLCHHQGLGNIEAAGLMAISVEALESLLSRGRRALKASL 178
            AL+ +P RQREAI+L ++Q + N EAA +M +SV+ALESLLSRGRRAL+  L
Sbjct: 123 RALSLIPERQREAIILVYYQEMSNREAADIMHVSVDALESLLSRGRRALQKIL 175