Pairwise Alignments

Query, 340 a.a., transposase from Caulobacter crescentus NA1000

Subject, 341 a.a., IS110 family transposase ISCARN111 from Methylophilus sp. DMC18

 Score =  277 bits (709), Expect = 2e-79
 Identities = 153/339 (45%), Positives = 216/339 (63%), Gaps = 8/339 (2%)

Query: 1   MMTTTIGLDLAKSVFQVHGVSSEGQ-VTVRRKLRRGELVSFFRDLPPCLIGMEACATAHY 59
           M   T+G+DLAK++F +HGV ++G  V ++ ++ R +L+S   +LPPCLIG+EAC  AH+
Sbjct: 1   MNIVTLGIDLAKNIFALHGVDNQGHAVLIKPRVARDQLLSIVANLPPCLIGVEACTGAHH 60

Query: 60  WARELSALGHEVRLMPPSYVKAYL---RRQKNDAADAEAICEAVTRPTMRFVPVKSAERQ 116
           WAR  S  GH VRLM P +V  Y    +R KNDAADA AICEAVTRP MRFVPVK   +Q
Sbjct: 61  WARVFSQHGHIVRLMAPKFVAPYRMSGKRGKNDAADAAAICEAVTRPNMRFVPVKDTHQQ 120

Query: 117 AILTLHRTRELLVRQKTTLIRAIRGHCAEFGLVVPQGARRVFDLLNLMREASSSSLPETA 176
           A+L++HRTR+  V ++T     +RG  AEFG+V+PQ   R+   ++L  +    +LP+ A
Sbjct: 121 ALLSIHRTRQGFVEERTACYNRLRGLIAEFGVVLPQKLERLRREIDLHLD----TLPDLA 176

Query: 177 MVTMEMLGAQMEALALQIRTLERRLLAWHRENQTSQRLATIPGVGIITSTALAASISDPR 236
              +  L    +AL  +I   +  +    +++  S RL  IPG+G IT++AL AS+ +  
Sbjct: 177 RCCVLDLLTHADALDERITAYDALIQRAAKQDDRSLRLMQIPGIGYITASALVASLGNGH 236

Query: 237 LFRSGREFAAFLGLVPRQNSSGGKDRLGRITKKGDGYLRKLLVVGATSVIRRARTGVTPS 296
            F SGR+ AA++GLVP Q SSGGK RLGRITK GD YLR LLV+GA +V+          
Sbjct: 237 DFESGRQLAAWVGLVPGQYSSGGKPRLGRITKAGDAYLRSLLVMGARAVMVSVGDKQDRF 296

Query: 297 AGWVQSLLERRPSRVVTVAMANKTARIAWAVMTRGESYR 335
           + WV+SL+ERR      +A+A K  R+ WA +  G+ ++
Sbjct: 297 SCWVRSLVERRGYWKAAIAIAAKNLRLVWAALKYGDDFK 335