Pairwise Alignments

Query, 340 a.a., transposase from Caulobacter crescentus NA1000

Subject, 341 a.a., Transposase IS116/IS110/IS902 family protein from Alteromonas macleodii MIT1002

 Score =  245 bits (626), Expect = 1e-69
 Identities = 138/340 (40%), Positives = 205/340 (60%), Gaps = 2/340 (0%)

Query: 1   MMTTTIGLDLAKSVFQVHGVSSEGQVTVRRKLRRGELVSFFRDLPPCLIGMEACATAHYW 60
           M  TTIGLDLAKSV  V   +  G++  ++ LRR +++ FF +L PCL+G+E+CA+AHYW
Sbjct: 1   MNITTIGLDLAKSVSHVVCCNQAGKIVRKKMLRRTQILHFFSELSPCLVGVESCASAHYW 60

Query: 61  ARELSALGHEVRLMPPSYVKAYLRRQKNDAADAEAICEAVTRPTMRFVPVKSAERQAILT 120
           ARE++  GH+V+ + P +VKAY+R  K D  DA AI EAV RP MRFV  K+  +Q I  
Sbjct: 61  AREIAKYGHQVKQIAPQHVKAYVRGNKTDFNDALAIAEAVVRPEMRFVQTKTQTQQDIQA 120

Query: 121 LHRTRELLVRQKTTLIRAIRGHCAEFGLVVPQGARRVF-DLLNLMREASSSSLPETAMVT 179
           LH  R+   R +T     IRG   E+G+++P G   V+  L  L      + L E     
Sbjct: 121 LHVMRKKCERDRTANSNEIRGLLNEYGIILPVGISHVYKSLPELFDRQVENGLSELFKEL 180

Query: 180 MEMLGAQMEALALQIRTLERRLLAWHRENQTSQRLATIPGVGIITSTALAASISDPRLFR 239
           +E    ++  L   +    +++     +++  +RL +IPGVG I ++AL   I +   F+
Sbjct: 181 LERHYQKLVELDEHLDWYTKKIKQL-SQHEACRRLQSIPGVGPIIASALYQHIGNGSEFK 239

Query: 240 SGREFAAFLGLVPRQNSSGGKDRLGRITKKGDGYLRKLLVVGATSVIRRARTGVTPSAGW 299
           +GR  +A LGLVP+Q+SSGGK  L  I+K+GD YLR LL+ GA +V+R ++   TP + W
Sbjct: 240 NGRAVSASLGLVPKQHSSGGKHNLQGISKRGDSYLRTLLIHGARAVMRVSKHKETPLSQW 299

Query: 300 VQSLLERRPSRVVTVAMANKTARIAWAVMTRGESYRAMAT 339
           ++ + + R      VA+ANK ARIAWA++ +G  Y+   T
Sbjct: 300 IKRIEQTRGRNKAAVALANKLARIAWALLAQGGDYQPELT 339