Pairwise Alignments

Query, 462 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Caulobacter crescentus NA1000

Subject, 477 a.a., UDP-MurNAc-pentapeptide synthetase from Agrobacterium fabrum C58

 Score =  332 bits (851), Expect = 2e-95
 Identities = 200/462 (43%), Positives = 270/462 (58%), Gaps = 15/462 (3%)

Query: 5   LWTADEIAEAVGGQVAGDF--AVSGVSIDTRTVEPGDLFVPLVGVR-DGHDFVPQAVANG 61
           LWT  ++     G+  G+    ++G+SID+RTV+ G+ F  + G R DGHD+   AVANG
Sbjct: 4   LWTVADMIAITAGRPVGNLPTGITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFAVANG 63

Query: 62  AAGVLAARA-------VDAPAVMVADTFKALEALGVAARERAPQCKRGAVTGSVGKTSVT 114
           A+ ++ A A       +  P ++V D   AL  L +AARER    +  AVTGSVGKT+  
Sbjct: 64  ASLLVVAEAKLPALGRLTVPMIVVEDVLAALGKLALAARERT-SARIIAVTGSVGKTTTK 122

Query: 115 RAIEAGLRLAGKAHASVKSYNNHIGVPLTLARMPRDTERAVFEVGMNHAGEIVPLSGFVR 174
             +   L  +G+ HA+V S+NNH GVPLTLARMP DTE  VFE+GMNH+GEI PL   VR
Sbjct: 123 EMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVKMVR 182

Query: 175 PHAVAITTVGPVHIENFSDGEAGVARAKAEILAGLQPGGIAVLNADNHWFDFLKGEAEKV 234
           PH   ITT+ P H+ NF + E  +A AKAEI  G++ GG  +LN DN  F+ L+  A++ 
Sbjct: 183 PHVAIITTIAPAHLGNFKNIEE-IAAAKAEIFEGVEEGGSVILNRDNAQFEQLEEAAQEA 241

Query: 235 GAT-VWSFGEAAGATARLTGFQVEGAGATVSVDLRGEALTFPIHQTGVHWGPNSLCVLLM 293
           G   + +FG+ A A  RL  F+    G+T+   L GE     I+  G H   N++ VL  
Sbjct: 242 GIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGETSELHINIPGRHIADNAMAVLGA 301

Query: 294 LEALDVPRETALAALAAFAPIEGRGAEKTIRIPGGAFTLVDESYNANPVSMQAALKTLGA 353
           +       + AL AL     ++GRG    + I GG+F L+DESYNANP SM+AA+  L  
Sbjct: 302 VAVTGANLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNANPASMRAAIAVLAE 361

Query: 354 RKVA--GRRVVALTDMLELGEGSAQFHAELAEPIAAANVDAVFLAGVHMKSLWEALPPTR 411
            +    GRRV  L DMLE+GE SAQ H ELA P+ AA ++ V+LAG  M +L +ALP + 
Sbjct: 362 TETQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWLAGEAMAALRDALPDSV 421

Query: 412 RGGYAEVAEKLTSVLAGAVQPGDVVMVKGSNGSKAGVLAAAL 453
              +     +LT      VQPGD +MVK S G   G + AAL
Sbjct: 422 TVIWFPTTAELTDFALQWVQPGDALMVKSSLGLGFGKIVAAL 463