Pairwise Alignments

Query, 322 a.a., type IV secretory pathway, VirB11 ATPase from Caulobacter crescentus NA1000

Subject, 345 a.a., Conjugative transfer protein TrbB from Variovorax sp. SCN45

 Score =  145 bits (366), Expect = 1e-39
 Identities = 102/303 (33%), Positives = 166/303 (54%), Gaps = 33/303 (10%)

Query: 18  LDRADVTDIWVNRPGEVWIETTKGVTSRLAAPDLTDQALQRLARQIAAASHQGVSREQPL 77
           L+  DV +I +N    +WI+      + +   +L +   +R+ R +AA     V R QPL
Sbjct: 32  LEDPDVVEIMLNPDRTLWIDRLSTGRAPMGV-ELPEADGERIIRLVAAHVGAEVHRGQPL 90

Query: 78  LSASLPN-GARVQIIAPPATRGDLALAIRKHTLSDLSLSDLAIGGTLAPPALTGRADADA 136
           L+A LP  G R + I PPA  G  A A+RK  L  + L+               R  +D 
Sbjct: 91  LTAELPETGERFEGILPPAAPGP-AFALRKRALGLIPLA---------------RYVSDE 134

Query: 137 QLRALLSAGDVEGFLRTAIQRRKTIVLSGGTSSGKTTLLNALVKEIPAH-ERLVLIEDAP 195
            +     +G + GFL  A++ R+ I+++GGTS+GKTTL NAL+ EI A  +R++++ED  
Sbjct: 135 MM-----SGALAGFLVRAVRERQNILIAGGTSTGKTTLANALLAEIAATGDRVLVLEDTV 189

Query: 196 EIQLRHENAIGLIAARSDTGEAQVDAEDLLQASLRMRPDRILLGELRGREAFAFLRAVNT 255
           E+Q    + + L      T +  V  ++L+++S+R+RPDR+++GE+RG EA   ++   T
Sbjct: 190 ELQCVARDHVPL-----RTRQGVVSMQELVRSSMRLRPDRVVVGEVRGAEALDLIKVWGT 244

Query: 256 GHPGSITTVHADSPQGALDQIALLSLLAGVDLGWDTVRNYVRQVVDIVVQLNRVGGGRKV 315
           GHPG I T+HA SP GAL ++  L L   V    +  R  + + V++VV +   G  R++
Sbjct: 245 GHPGGIATIHAGSPLGALLRLEQLILEVAV----NPPRALIAEAVNVVVHIAGRGRKRRI 300

Query: 316 TAV 318
            ++
Sbjct: 301 ESI 303