Pairwise Alignments

Query, 859 a.a., ATP-dependent helicase from Caulobacter crescentus NA1000

Subject, 1428 a.a., ATP-dependent RNA helicase SrmB from Pseudomonas sp. DMC3

 Score =  234 bits (597), Expect = 3e-65
 Identities = 205/672 (30%), Positives = 294/672 (43%), Gaps = 79/672 (11%)

Query: 9   PQFQAWFAKRGWTPRDHQLAMLDKARAGRGALLIAPTGGGKTLAGFLPSLIELAER---P 65
           P   AWF K        Q       R  R  L+ APTG GKTL  FL  L EL  R    
Sbjct: 16  PAVSAWFNKTFPAVTTAQARAWPLIRQRRSTLIAAPTGSGKTLTAFLAVLDELVHRGLEQ 75

Query: 66  PRNTPAGVHTLYISPLKALAVDVERNLLTPI-------REMGLP---IVAESRTGDTGES 115
           P   PA    +Y+SPLKAL+ D++ NL  P+       REMGLP   I    RTGDT + 
Sbjct: 76  PEGLPAETLVVYVSPLKALSNDIQINLQNPLAGITAQLREMGLPELTITTAVRTGDTPQK 135

Query: 116 RKARQKVRPPDILLTTPEQLALFCAWEGAREYFSDLRCVIIDEAHAIWPSKRGDLLALGL 175
            +A  +   P IL+TTPE L +    E  R      R VIIDE HA+   KRG  L+L L
Sbjct: 136 DRAAMRKTAPHILVTTPESLYVLLGSESGRRMLGTTRTVIIDEIHAMAAGKRGSHLSLSL 195

Query: 176 SRLQQF-APNMRRVGLSATVDDPDLVRKWLGVNRVENPPPRAGEVSAEPTEGASTADLQL 234
            RLQ   A  + R+GLSAT    + V ++L                              
Sbjct: 196 ERLQALCAEPLTRIGLSATQKPVEAVARFL------------------------------ 225

Query: 235 ALSGPPGHLPRAQGRICEPDIDLVLGAGGAQPVVEVLVSGGRVPWAGHTAEHAMAEVYD- 293
                 GH      R CE     ++  G A+P  ++ +    VP +   A      VY+ 
Sbjct: 226 -----VGH-----ARPCE-----IVDIGHARPR-DLGIEVPPVPLSAVMANDVWELVYER 269

Query: 294 ---IIKAAKTALVFVNTRFQAEFAFQRLWELNDEGLPIALHHGSLSAEQRRKVEAAMARG 350
              + +  +T L+FVNTR  AE   + L E   +   +A HHGSL+ E R   E  + RG
Sbjct: 270 LAELAREHRTTLIFVNTRRLAERLSRHLSERLGKQA-VAAHHGSLAKEFRLDAEQRLKRG 328

Query: 351 ELRAVVCTSTLDMGIDWGDVDLVIQLAAPKGASRMVQRIGRANHRLDEPSRAIFVPASRF 410
           EL+ ++ T++L++GID G+VDLV Q+++P+  +  +QR+GR+ H++    +      +R 
Sbjct: 329 ELQVLIATASLELGIDIGEVDLVCQISSPRSIAAFLQRVGRSGHQVGGTPKGRLFATTRD 388

Query: 411 EMLECRAAADAILENHLDGEPPRTGALDVLAQHIMGCACSEPFKPTDLYDEVRSAGPYAE 470
           +++EC A  D +    LD        LDVLAQ I+    S+ +    L    R A PY +
Sbjct: 389 DLIECAALLDCVRRGELDTLHIPEKPLDVLAQQIIAEVSSQEWSEDALLAMFRRAWPYRD 448

Query: 471 LTWEDFEAVVDFVS---TGGYALRTYDKFRRIVQIADGLRTARNAQARQQHRMNVGAIIS 527
           L  + ++A++  ++    G   +R+    R  V      RT R  +  Q   +  G  I 
Sbjct: 449 LDEKHYQALLSMLAEGYNGRQGIRSAYLHRDAVS-----RTLRGRRGAQLTAVTSGGTIP 503

Query: 528 PAMINIRIGGGRKPVGGRKIGEAEEGYFEQLTPGDTFVFAGQVWRYNSLVGADAYVSPAP 587
               N       +P  G  IG   E +  +   GD F      +R   +      V  A 
Sbjct: 504 D---NADYSVLLEP-QGLNIGSVNEDFAVESIAGDVFQLGNTSYRILRVESGKVRVEDAQ 559

Query: 588 NDDPKMPSWGGSKFPLSTYLAERVRQMMHDERE-WSALPGDVQEWLSW-QKIRSAIPAEG 645
              P +P W G     S  L+  V ++     E  SA PG++Q  L W   I     A  
Sbjct: 560 GMPPTIPFWLGEAPGRSDELSAAVARLQAQLDELLSASPGNLQPALDWLTTILGLNLASA 619

Query: 646 EMLLETFPRGKR 657
           E L+E   R ++
Sbjct: 620 EQLVEYLARARQ 631