Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor Mfd from Caulobacter crescentus NA1000

Subject, 1149 a.a., Transcription-repair-coupling factor from Pseudomonas sp. DMC3

 Score =  771 bits (1990), Expect = 0.0
 Identities = 450/1133 (39%), Positives = 654/1133 (57%), Gaps = 32/1133 (2%)

Query: 26   ALVMADIARARGGLTAFVARDTARAGAFIDALKFFAPEIEAVLFPSWDCLPYDRIGPSSG 85
            +L +A+ A A    T  +  D+  A      L FFAP++  + FP W+ LPYD   P   
Sbjct: 27   SLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDWETLPYDLFSPHQD 86

Query: 86   VSATRMATLSRLARGLGESKAAILVIAAPALLQRVPTKEVLLRASYAAKVGANVDIKDLE 145
            + + R+A+L RL     E    +LV+     L R+   + LL +S    +G  +D++ + 
Sbjct: 87   IISQRIASLYRLP----ELAHGVLVVPITTALHRLAPTKFLLGSSLVLDIGQKLDVEHMR 142

Query: 146  RYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAAEEPVRLDLFGDTLESIRAFDPETQRS 205
                 +GY    TV E GEF +RG +ID++P  ++ P R+DLF D +E++R FDPETQRS
Sbjct: 143  ARLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPYRIDLFDDEIETLRTFDPETQRS 202

Query: 206  TKQLKEIDLLPVSEALLDADGISRFRKGYVAEFGAPGDDA-LYAAVSEGGRRAGLEHWLP 264
              +++ + LLP  E  L  D ++RF+  +   F        ++  +S G   AG+E++LP
Sbjct: 203  IDKVESVKLLPAREFPLQKDAVTRFKARFRERFDVDFRRCPIFQDLSSGITPAGIEYYLP 262

Query: 265  LFYERMATLFDYLPAGALIGVDNQATEARDERLAMIQDAYDARASADRKSAYRPLAPEA- 323
            LF++  +TLFDYLP    +       +A +     +++ Y+ R    R    RPL P A 
Sbjct: 263  LFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEER----RVDPSRPLLPPAE 318

Query: 324  LYLTAEEWERELSDRTHRRFTPFQPQGLDVIDLGAKLGRV-FAAERAQDSVNLFEAT--- 379
            L+L  E+    L  +   R    Q       D+   +GR  F A    D     +AT   
Sbjct: 319  LFLPVEDCFARL--KNWPRVVASQQ------DVETGVGRERFPAHALPDLAIEAKATQPL 370

Query: 380  ADHAKALAAQGKRVLFASWSEGSSERLGTMLADHGLKKIPYAGYWQAAKANDPKVPQRVV 439
            A  A  L     RVLF + S G  E L  +L    L+       W    A+  ++   + 
Sbjct: 371  AALAGFLEEFPGRVLFTAESAGRREVLLELLERLKLRP-KTVDSWPDFVASKDRLAITIA 429

Query: 440  LPLDHGFETD--SLAVISETDILGDRLARPRKKRRAANFLAEA-----SALTPGDLVVHI 492
             PLD G   D  +LA+++E+ + G R+ + R++ + ++   +A     + L  G  VVHI
Sbjct: 430  -PLDEGLLLDDPALALVAESPLFGQRVMQRRRREKRSDVSNDAVIKNLTELREGAPVVHI 488

Query: 493  DHGIGRYEGLKTLDVQGAPHDCLDLLYGGEAKLYLPVENIDLLTRYGAADAENVQLDKLG 552
            DHG+GRY GL  L++     + L L Y   AKLY+PV N+ L+ RY  +D     L +LG
Sbjct: 489  DHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDSLAPLHRLG 548

Query: 553  GAAWQGRKAKAKERLRVMAEGLIQIAAARQLKTVEETDPPSGVFDEFCARFPYEETDDQL 612
               WQ  K KA E++R +A  L+ I A R  +       P   +  F A FP+EET DQ 
Sbjct: 549  SETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFPFEETPDQQ 608

Query: 613  SAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCPTTLLARQHY 672
            + I  V ED+ + KPMDRL+CGDVGFGKTEVA+RAAF+    G+QVAI+ PTTLLA+QHY
Sbjct: 609  ATIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHY 668

Query: 673  KTFKDRFQGWPVKVTRLSRLVTGKEAAETREGLANGQFEIVVGTHAILSKQVSFKDLGLV 732
             +F+DRF  WPV V  +SR  + KE       LA G+ +IV+GTH +LS  V  K+LGLV
Sbjct: 669  NSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDVKIKNLGLV 728

Query: 733  IVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREMSIIATPPVDRLAV 792
            I+DEE  FGV+ KE+LK LR++V +LTLTATPIPRTL MA+SG+R++SIIATPP  RL+V
Sbjct: 729  IIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSV 788

Query: 793  RTYISPFDPVTLREALLREKYRGGQSYYVVPRIKDLEDIEKFLRTQVPEVKFVVGHGQMA 852
            RT++   +  T++EALLRE  RGGQ YY+   +K +E     L   VPE +  +GHGQM 
Sbjct: 789  RTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMR 848

Query: 853  ATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANTLIVHRADMFGLAQLYQIRGRVGRS 912
              +LE VM+ FY  +++VL+A+TI+E+G+D+PSANT+I+ RAD FGLAQL+Q+RGRVGRS
Sbjct: 849  ERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRS 908

Query: 913  KARAYAYLTTPVEKSLTPSAEKRLQVLQSLDSLGAGFQLASHDLDQRGGGNLLGDEQSGH 972
              +AYAYL TP  + +T  AEKRL+ + +   LGAGF LA++DL+ RG G LLGD QSG 
Sbjct: 909  HHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQ 968

Query: 973  IKEIGVELYQQMLEDAVAELRQRQGQEALLEDRGWSPQINTGAAVMIPDDYVPDLNVRLS 1032
            I+ +G  LY +MLE AV  +R+ + Q  L +  G  P++N     +IP+DY+PD++ RL 
Sbjct: 969  IQAVGFTLYMEMLERAVKSIRKGE-QPNLDQPLGGGPEVNLRVPALIPEDYLPDVHARLI 1027

Query: 1033 LYRRLSEAEQAADREALAAEMIDRFGPLPPETDSLLKVVAIKGLCREANVAKIDVGPKGA 1092
            LY+R++ A      + L  EMIDRFG LP  T +L+++ A+K    +  + K+D GP+G 
Sbjct: 1028 LYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEKLGIKKVDGGPQGG 1087

Query: 1093 VASFRGDSYANPLGLMQHVAKNSLIWKVRPDQKVVIKGEWDTPAQRLDAAEKI 1145
               F   +  +P+ L++ +      +K         +   + P +R +  E +
Sbjct: 1088 RIEFEAQTPVDPMTLIKLIQTQPKRYKFEGATMFKFQVPMERPEERFNTVEAL 1140