Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor Mfd from Caulobacter crescentus NA1000

Subject, 1159 a.a., transcription-repair coupling factor from Magnetospirillum magneticum AMB-1

 Score = 1252 bits (3240), Expect = 0.0
 Identities = 642/1154 (55%), Positives = 836/1154 (72%), Gaps = 21/1154 (1%)

Query: 13   GGLTLAGAPEGFDALVMADIAR---ARGGLTAFVARDTARAGAFIDALKFFAPEIEAVLF 69
            G   LAGAPEG DAL++A++A    A+GG+   VARD  R     +AL FFAP+++ + F
Sbjct: 12   GRRKLAGAPEGRDALLLAELAAGGCAQGGIL-HVARDEGRMARVAEALAFFAPDLQVLEF 70

Query: 70   PSWDCLPYDRIGPSSGVSATRMATLSRLARGLGESKAAILVIAAPALLQRVPTKEVLLRA 129
            P WDC+PYDR+ P   + A R+ TL+RLA G+    A +++   P L QRVP +E L  A
Sbjct: 71   PGWDCVPYDRVSPHVDMVARRIDTLARLADGV--KGAFVVLTTVPGLAQRVPPREALASA 128

Query: 130  SYAAKVGANVDIKDLERYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAAEEPVRLDLFG 189
            +  A+ G+ + +  L  + + NGY RA TV E GE+A+RGG++D+YPP + EP+RLD FG
Sbjct: 129  TLDARKGSRLSMDKLIGFLSKNGYVRADTVMEPGEYAVRGGIVDLYPPGSAEPLRLDFFG 188

Query: 190  DTLESIRAFDPETQRSTKQLKEIDLLPVSEALLDADGISRFRKGYVAEFGA-PGDDALYA 248
            D ++S+R+FDP +QR+T  +      PVSE  LD   I+RFR  Y   FG   G D LY 
Sbjct: 189  DEIDSVRSFDPMSQRTTGPMAGFVCRPVSEVGLDDASIARFRTNYREMFGVISGPDPLYE 248

Query: 249  AVSEGGRRAGLEHWLPLFYERMATLFDYLPAGALIGVDNQATEARDERLAMIQDAYDARA 308
            A+SEG +  G+EHWLPLF++ + TLF Y+P  A++ +D+Q+ EA   R A++ + +DARA
Sbjct: 249  AISEGIKFNGMEHWLPLFHDGLDTLFAYVPEAAVV-LDHQSDEALTARHALVLEYFDARA 307

Query: 309  S------ADRKSAYRPLAPEALYLTAEEWERELSDRTHRRFTPFQPQGLD--VIDLGAKL 360
                    +    Y P+ PE LYL   EW+R L+ R     +PF     D   +D G +L
Sbjct: 308  GLAGAGLTESGMVYHPILPERLYLERAEWDRLLAARPVLHLSPFDAVEGDEGAVDAGGRL 367

Query: 361  GRVFAAERAQDSVNLFEATADHAKALAAQGKRVLFASWSEGSSERLGTMLADHGLKKIPY 420
            GR FA  RA+  VN+++   +HA+  A  G+RV+ A+W++GS +RL  +L DHG+K I  
Sbjct: 368  GRDFADMRARPGVNVYDCVREHAEEQAKAGRRVVIAAWTQGSRDRLAGVLRDHGIKGIET 427

Query: 421  AGYWQAAKANDPKVPQRVVLPLDHGFETDSLAVISETDILGDRLARP-RKKRRAANFLAE 479
               W  A+  D       VL LDHGF T  LAVI+E DILGDRLARP RKK++ A F+AE
Sbjct: 428  VESWAEAQGLDKGRVAVAVLGLDHGFATPDLAVITEQDILGDRLARPARKKKKGAQFIAE 487

Query: 480  ASALTPGDLVVHIDHGIGRYEGLKTLDVQGAPHDCLDLLYGGEAKLYLPVENIDLLTRYG 539
            ASAL  GDLVVH++HGIGRY+GL  L+V GAPHDCL +LY G  KL++PVENID+LTR+G
Sbjct: 488  ASALAEGDLVVHVEHGIGRYDGLVALEVSGAPHDCLRVLYDGGDKLFVPVENIDVLTRFG 547

Query: 540  AADAENVQLDKLGGAAWQGRKAKAKERLRVMAEGLIQIAAARQLKTVEETDPPSGVFDEF 599
            +  A  V LDKLGG AWQ RKAK K+R+R +A+ LI IAA R+++  E   P  G++DEF
Sbjct: 548  SEQA-GVSLDKLGGTAWQARKAKLKKRIRDIADQLIGIAAQRKMRQGEALVPAEGLYDEF 606

Query: 600  CARFPYEETDDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVA 659
            CARFP+ ET+DQ+ AI D + DL+SGKPMDRLICGDVGFGKTEVA+R AFV A+ G QVA
Sbjct: 607  CARFPFAETEDQMRAIEDSIADLASGKPMDRLICGDVGFGKTEVAMRVAFVAALQGLQVA 666

Query: 660  IVCPTTLLARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETREGLANGQFEIVVGTHAI 719
            +V PTTLLARQHY+TFK+RF G PV+V +LSRLVT K A+E + G+A+G  ++VVGTHA+
Sbjct: 667  VVVPTTLLARQHYRTFKERFSGLPVRVEQLSRLVTAKTASEVKAGVADGSVDVVVGTHAL 726

Query: 720  LSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREM 779
            L+K + FK LGL+I+DEEQHFGV HKE+LK+L+ADVH+LTLTATPIPRTLQMALSG++EM
Sbjct: 727  LAKGIGFKRLGLLIIDEEQHFGVAHKERLKQLKADVHVLTLTATPIPRTLQMALSGVKEM 786

Query: 780  SIIATPPVDRLAVRTYISPFDPVTLREALLREKYRGGQSYYVVPRIKDLEDIEKFLRTQV 839
            S+IATPP+DRLAVRT++ P+DPV LRE++LRE+YRGGQ +YV PR+ D++ + + L   V
Sbjct: 787  SVIATPPIDRLAVRTFVLPYDPVVLRESILRERYRGGQVFYVCPRLADIDRVAERLAKLV 846

Query: 840  PEVKFVVGHGQMAATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANTLIVHRADMFGL 899
            PEVK  V HG++A   LE+VM AF E QYDVLL+T I+ESG+D+PS NTLI+HRADMFGL
Sbjct: 847  PEVKTAVAHGRLAPADLEEVMVAFGEKQYDVLLSTNIIESGIDMPSVNTLIIHRADMFGL 906

Query: 900  AQLYQIRGRVGRSKARAYAYLTTPVEKSLTPSAEKRLQVLQSLDSLGAGFQLASHDLDQR 959
             QLYQ+RGRVGR K R YAY T P +K L+ +AEKRLQV+Q+LD+LGAGFQLASHDLD R
Sbjct: 907  GQLYQLRGRVGRGKTRGYAYFTLPNDKVLSKAAEKRLQVMQALDTLGAGFQLASHDLDIR 966

Query: 960  GGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELRQRQGQEALLEDRGWSPQINTGAAVMI 1019
            G GNLLG+EQSGHI+E+GVELYQQ+LE+AVA  +  QG EA  E   WSPQI  G  V+I
Sbjct: 967  GAGNLLGEEQSGHIREVGVELYQQLLEEAVAAAKGGQGGEAAEE---WSPQIAVGTPVLI 1023

Query: 1020 PDDYVPDLNVRLSLYRRLSEAEQAADREALAAEMIDRFGPLPPETDSLLKVVAIKGLCRE 1079
            P+ YV DL+VRLSLYRR+      A+ EALAAE+IDRFG LPPE ++LL+VVAIK LC+ 
Sbjct: 1024 PETYVADLSVRLSLYRRIGSLADQAEIEALAAELIDRFGKLPPEVENLLEVVAIKALCKL 1083

Query: 1080 ANVAKIDVGPKGAVASFRGDSYANPLGLMQHVAKNSLIWKVRPDQKVVIKGEWDTPAQRL 1139
            A + K+D GPKGAV S RG+ +ANP  L+Q +A+++   K+RPD K+V    W+ P QR+
Sbjct: 1084 AGIDKVDSGPKGAVVSLRGNVFANPAALVQFIARSAGSCKIRPDHKIVFLRAWEDPKQRI 1143

Query: 1140 DAAEKILTVLAKLA 1153
                 ++  LA+LA
Sbjct: 1144 VGLRNVIGKLAELA 1157