Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor Mfd from Caulobacter crescentus NA1000

Subject, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECRC100

 Score =  738 bits (1905), Expect = 0.0
 Identities = 436/1103 (39%), Positives = 645/1103 (58%), Gaps = 44/1103 (3%)

Query: 26   ALVMADIARARGGLTAFVARDTARAGAFIDALKFFAPEIEAVLFPSWDCLPYDRIGPSSG 85
            A ++A+IA    G    +A D   A    D +  F  ++   L   W+ LPYD   P   
Sbjct: 44   ATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL-ADWETLPYDSFSPHQD 102

Query: 86   VSATRMATLSRLARGLGESKAAILVIAAPALLQRVPTKEVLLRASYAAKVGANVDIKDLE 145
            + ++R++TL +L       +  +L++    L+QRV     L   +   + G  +    L 
Sbjct: 103  IISSRLSTLYQLPT----MQRGVLIVPVNTLMQRVCPHSFLHGHALVMEKGQRLSRDALR 158

Query: 146  RYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAAEEPVRLDLFGDTLESIRAFDPETQRS 205
                  GY     V E GE+A RG ++D++P  +E P RLD F D ++S+R FD ++QR+
Sbjct: 159  TQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRT 218

Query: 206  TKQLKEIDLLPVSEALLDADGISRFRKGYVAEFGAPGD-DALYAAVSEGGRRAGLEHWLP 264
             ++++ I+LLP  E   D   I  FR  +   F    D + +Y  VS+G   AG+E+W P
Sbjct: 219  LEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQP 278

Query: 265  LFY-ERMATLFDYLPAGALI----GVDNQATEARDERLAMIQDAYDARASADRKSAYRPL 319
            LF+ E +  LF Y PA  L+     ++N A   + + LA  ++              RPL
Sbjct: 279  LFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTLARFENR--------GVDPMRPL 330

Query: 320  AP-EALYLTAEEWERELSDRTHRRF-TPFQPQGLDVIDLGAKLGRVFAAERAQDSVNLFE 377
             P ++L+L  +E   EL +    +  T   P      +LG +     A +  Q      +
Sbjct: 331  LPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ------K 384

Query: 378  ATADHA-KALAAQGKRVLFASWSEGSSERLGTMLADHGLKKIPYAGYWQAAKANDPKVPQ 436
            A  D   K L +    V+F+  SEG  E LG +LA     KI      +  +A+D +   
Sbjct: 385  APLDALRKFLESFDGPVVFSVESEGRREALGELLARI---KIAPQRIMRLDEASD-RGRY 440

Query: 437  RVVLPLDHGF--ETDSLAVISETDILGDRLARPRK-KRRAAN---FLAEASALTPGDLVV 490
             ++   +HGF     +LA+I E+D+LG+R+AR R+  RR  N    +   + L  G  VV
Sbjct: 441  LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 500

Query: 491  HIDHGIGRYEGLKTLDVQGAPHDCLDLLYGGEAKLYLPVENIDLLTRYGAADAENVQLDK 550
            H++HG+GRY G+ TL+  G   + L L Y  +AKLY+PV ++ L++RY     EN  L K
Sbjct: 501  HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 560

Query: 551  LGGAAWQGRKAKAKERLRVMAEGLIQIAAARQLKTVEETDPPSGVFDEFCARFPYEETDD 610
            LGG AW   + KA E++R +A  L+ I A R  K           +  FC  FP+E T D
Sbjct: 561  LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 620

Query: 611  QLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCPTTLLARQ 670
            Q  AI+ VL D+     MDRL+CGDVGFGKTEVA+RAAF+   + KQVA++ PTTLLA+Q
Sbjct: 621  QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 680

Query: 671  HYKTFKDRFQGWPVKVTRLSRLVTGKEAAETREGLANGQFEIVVGTHAILSKQVSFKDLG 730
            HY  F+DRF  WPV++  LSR  + KE  +    +A G+ +I++GTH +L   V FKDLG
Sbjct: 681  HYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 740

Query: 731  LVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREMSIIATPPVDRL 790
            L+IVDEE  FGV+HKE++K +RA+V +LTLTATPIPRTL MA+SG+R++SIIATPP  RL
Sbjct: 741  LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 800

Query: 791  AVRTYISPFDPVTLREALLREKYRGGQSYYVVPRIKDLEDIEKFLRTQVPEVKFVVGHGQ 850
            AV+T++  +D + +REA+LRE  RGGQ YY+   +++++   + L   VPE +  +GHGQ
Sbjct: 801  AVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 860

Query: 851  MAATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANTLIVHRADMFGLAQLYQIRGRVG 910
            M   +LE VM  F+  +++VL+ TTI+E+G+DIP+ANT+I+ RAD FGLAQL+Q+RGRVG
Sbjct: 861  MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 920

Query: 911  RSKARAYAYLTTPVEKSLTPSAEKRLQVLQSLDSLGAGFQLASHDLDQRGGGNLLGDEQS 970
            RS  +AYA+L TP  K++T  A+KRL+ + SL+ LGAGF LA+HDL+ RG G LLG+EQS
Sbjct: 921  RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 980

Query: 971  GHIKEIGVELYQQMLEDAVAELRQRQGQEALLED-RGWSPQINTGAAVMIPDDYVPDLNV 1029
            G ++ IG  LY ++LE+AV  L  + G+E  LED      ++      ++PDD++PD+N 
Sbjct: 981  GSMETIGFSLYMELLENAVDAL--KAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNT 1038

Query: 1030 RLSLYRRLSEAEQAADREALAAEMIDRFGPLPPETDSLLKVVAIKGLCREANVAKIDVGP 1089
            RLS Y+R++ A+   + E +  E+IDRFG LP    +LL +  ++   ++  + K++   
Sbjct: 1039 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE 1098

Query: 1090 KGAVASFRGDSYANP---LGLMQ 1109
            KG V  F   ++ NP   +GL+Q
Sbjct: 1099 KGGVIEFAEKNHVNPAWLIGLLQ 1121