Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor Mfd from Caulobacter crescentus NA1000

Subject, 1164 a.a., Transcription-repair-coupling factor from Escherichia fergusonii Becca

 Score =  741 bits (1912), Expect = 0.0
 Identities = 437/1106 (39%), Positives = 646/1106 (58%), Gaps = 50/1106 (4%)

Query: 26   ALVMADIARARGGLTAFVARDTARAGAFIDALKFFAPEIEAVLFPSWDCLPYDRIGPSSG 85
            A ++A+IA    G    +A D   A    D +  F  ++   L   W+ LPYD   P   
Sbjct: 44   ATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL-ADWETLPYDSFSPHQD 102

Query: 86   VSATRMATLSRLARGLGESKAAILVIAAPALLQRVPTKEVLLRASYAAKVGANVDIKDLE 145
            + ++R++TL +L       +  +L++    L+QRV     L   +   K G  +    L 
Sbjct: 103  IISSRLSTLYQLPT----MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALR 158

Query: 146  RYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAAEEPVRLDLFGDTLESIRAFDPETQRS 205
                  GY     V E GE+A RG ++D++P  +E P RLD F D ++S+R FD ++QR+
Sbjct: 159  TQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRT 218

Query: 206  TKQLKEIDLLPVSEALLDADGISRFRKGYVAEFGAPGD-DALYAAVSEGGRRAGLEHWLP 264
             ++++ I+LLP  E   D   I  FR  +   F    D + +Y  VS+G   AG+E+W P
Sbjct: 219  LEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQP 278

Query: 265  LFY-ERMATLFDYLPAGALI----GVDNQATEARDERLAMIQDAYDARASADRKSAYRPL 319
            LF+ E +  LF Y PA  L+     ++N A   + + LA  ++              RPL
Sbjct: 279  LFFSEPLPPLFSYFPANTLLINTGDLENSAERFQADTLARFENR--------GVDPMRPL 330

Query: 320  AP-EALYLTAEEWERELSDRTHRRF-TPFQPQGLDVIDLGAKLGRVFAAERAQ----DSV 373
             P ++L+L  +E   EL +    +  T   P      +LG +     A +  Q    D++
Sbjct: 331  LPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAIQAQQKAPLDAL 390

Query: 374  NLFEATADHAKALAAQGKRVLFASWSEGSSERLGTMLADHGLKKIPYAGYWQAAKANDPK 433
              F  T D           V+F+  SEG  E LG +LA     KI      +  +A+D +
Sbjct: 391  RKFLETFDGP---------VVFSVESEGRREALGELLARI---KIAPQRIMRLDEASD-R 437

Query: 434  VPQRVVLPLDHGFETD--SLAVISETDILGDRLARPRK-KRRAAN---FLAEASALTPGD 487
                ++   +HGF     +LA+I E+D+LG+R+AR R+  RRA N    +   + L  G 
Sbjct: 438  GRYLMIGAAEHGFVDTMRNLALICESDLLGERVARRRQDSRRAINPDTLIRNLAELHIGQ 497

Query: 488  LVVHIDHGIGRYEGLKTLDVQGAPHDCLDLLYGGEAKLYLPVENIDLLTRYGAADAENVQ 547
             VVH++HG+GRY G+ TL+  G   + L L Y  +AKLY+PV ++ L++RY     EN  
Sbjct: 498  PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 557

Query: 548  LDKLGGAAWQGRKAKAKERLRVMAEGLIQIAAARQLKTVEETDPPSGVFDEFCARFPYEE 607
            L KLGG AW   + KA E++R +A  L+ I A R  K           +  FC  FP+E 
Sbjct: 558  LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 617

Query: 608  TDDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVAIVCPTTLL 667
            T DQ  AI+ VL D+     MDRL+CGDVGFGKTEVA+RAAF+   + KQVA++ PTTLL
Sbjct: 618  TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 677

Query: 668  ARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETREGLANGQFEIVVGTHAILSKQVSFK 727
            A+QHY  F+DRF  WPV++  +SR  + KE  +    +A G+ +I++GTH +L   V FK
Sbjct: 678  AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 737

Query: 728  DLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREMSIIATPPV 787
            DLGL+IVDEE  FGV+HKE++K +RA+V +LTLTATPIPRTL MA+SG+R++SIIATPP 
Sbjct: 738  DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 797

Query: 788  DRLAVRTYISPFDPVTLREALLREKYRGGQSYYVVPRIKDLEDIEKFLRTQVPEVKFVVG 847
             RLAV+T++  +D + +REA+LRE  RGGQ YY+   +++++   + L   VPE +  +G
Sbjct: 798  RRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 857

Query: 848  HGQMAATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANTLIVHRADMFGLAQLYQIRG 907
            HGQM   +LE VM  F+  +++VL+ TTI+E+G+DIP+ANT+I+ RAD FGLAQL+Q+RG
Sbjct: 858  HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 917

Query: 908  RVGRSKARAYAYLTTPVEKSLTPSAEKRLQVLQSLDSLGAGFQLASHDLDQRGGGNLLGD 967
            RVGRS  +AYA+L TP  K++T  A+KRL+ + SL+ LGAGF LA+HDL+ RG G LLG+
Sbjct: 918  RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 977

Query: 968  EQSGHIKEIGVELYQQMLEDAVAELRQRQGQEALLED-RGWSPQINTGAAVMIPDDYVPD 1026
            EQSG ++ IG  LY ++LE+AV  L  + G+E  LED      ++      ++PDD++PD
Sbjct: 978  EQSGSMETIGFSLYMELLENAVDAL--KAGREPSLEDLTSQQTEVELRMPSLLPDDFIPD 1035

Query: 1027 LNVRLSLYRRLSEAEQAADREALAAEMIDRFGPLPPETDSLLKVVAIKGLCREANVAKID 1086
            +N RLS Y+R++ A+   + E +  E+IDRFG LP    +LL +  ++   ++  + K++
Sbjct: 1036 VNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE 1095

Query: 1087 VGPKGAVASFRGDSYANP---LGLMQ 1109
               KG V  F   ++ NP   +GL+Q
Sbjct: 1096 GNEKGGVIEFAEKNHVNPAWLIGLLQ 1121