Pairwise Alignments

Query, 783 a.a., NAD-dependent DNA ligase from Caulobacter crescentus NA1000

Subject, 724 a.a., DNA ligase from Agrobacterium fabrum C58

 Score =  568 bits (1465), Expect = e-166
 Identities = 352/804 (43%), Positives = 460/804 (57%), Gaps = 107/804 (13%)

Query: 3   QIPVADLTEAQAVEDLERLADLLATHDIAYHQEDNPTVSDAEYDALKRRNLDIETRFPHL 62
           QIPV +LTE +A  +L  LA  LA HD  YH +D P +SDA+YDALKRRN  IE  FP L
Sbjct: 5   QIPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEAAFPAL 64

Query: 63  VRDNSPSMRVGATRAEQFAPVEHGVPMLSLDNAFSNDEAIEFDARVRRFLRISPSETVAY 122
           VR +SPS +VG T    FAP+ H  PMLSLDN FS ++  +F + V RFL   P +++A+
Sbjct: 65  VRADSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGHLPDDSIAF 124

Query: 123 TAEPKIDGLSASLRYEKGVLVQGATRGDGRVGEDVTANLRTIADIPHRLKGSGWPDVIEV 182
           TAEPKIDGLS S+RYE   L   ATRGDG  GE+VTAN+RTI +IP+ L     PDV+EV
Sbjct: 125 TAEPKIDGLSMSIRYENRKLKTAATRGDGTTGENVTANIRTIKEIPNELPADA-PDVVEV 183

Query: 183 RGEVYVELAAFAAFNKAAEEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFFGYAWGLV 242
           RGEVY+  + F A N   E  G++TY NPRN A+GSLRQ+D  ++A+R LRFF YA G V
Sbjct: 184 RGEVYMAKSDFLALNAQMEADGKQTYVNPRNTASGSLRQLDANVTAKRKLRFFAYALGEV 243

Query: 243 SEG-----FADSQWGALERLAEWGFVTTAPPAQRVLNAQGLLDIYAQFEVLRPTLGFDID 297
           S G      AD+Q+G +E+  EWGF    P  +R  +AQ LL+ Y +  V RP L +DID
Sbjct: 244 SNGGQPARIADTQYGIVEKFREWGFPVN-PLMKRFTSAQQLLEHYNEIGVARPDLDYDID 302

Query: 298 GVVYKVDDLELQRRLGFVSRSPRWAIARKFPAQRARTVLEAIDLQVGRTGAITPVARLKP 357
           GVVYKVD L+LQ RLGF SRSPRWA A KFPA++A T +E I++QVGRTGA+TPVARL P
Sbjct: 303 GVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTPVARLTP 362

Query: 358 VTVGGVSVTNATLHNGDEIARL------------DVRVGDTVVIQRAGDVIPQIVEVALD 405
           +TVGGV VTNATLHN D I  +            D+R+GDTV++QRAGDVIPQ+++V L+
Sbjct: 363 ITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQVLDVLLE 422

Query: 406 ARPDPAPPPYEFPHVCPCPLQTPLAREVTASGQESVVRRCTGEFACPFQRVEHLRHFVSR 465
            R   A   Y FP  CP      +      +G+   V RCTG F C  Q VEHL+HFVSR
Sbjct: 423 KRAAGA-AKYVFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLKHFVSR 481

Query: 466 RAFDIEGLGEKQLQAFFEEG----WITEPADIF--KLARDAEKLAVLREREGYGETSVAN 519
            AFDIEGLG KQ+  FFE       I    DIF  K  ++A  L  L   +G+G+ SV  
Sbjct: 482 NAFDIEGLGTKQIDFFFESDDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGKVSVKK 541

Query: 520 LVKGIEARRTIGMDRMIYGLGARDIGETTSTVLARNFDRFEDLQAAAEAAARALPGETYL 579
           L   I+ARR I + R+I+ LG R +GETT+ +LAR++  +E  + A +AAA     + + 
Sbjct: 542 LFDAIDARRAIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEKAMKAAADP-ASDAWA 600

Query: 580 ELSTAPGVGPKALDMLVEAGKGGVVADPWPQTDDLELKIGHAVPKLTKPARAALAQRYGT 639
           EL++  G+G      ++E  K        P+  D+       + +L +  +   A++  T
Sbjct: 601 ELNSIDGIGEVVARAIIEFYKE-------PRNLDV-------IDRLIRELQPKEAEKPST 646

Query: 640 WDAFADGLVAAASGAPGDDYLHLAAIDGVGPVAAQSLARFFAEDHNRQKVANLVAELDIQ 699
                        G+P         + G   V   SL + F  D  + +  +L A+  + 
Sbjct: 647 ------------EGSP---------VAGKTVVFTGSLEK-FTRDEAKARAESLGAK--VA 682

Query: 700 PVAKPKTDTAVAGKTIVFTGSLEKMTRDEAKAQAEGLGAKVASSVSKKTDLVVAGPGAGS 759
                KTD  VAG                      G G+K+A                  
Sbjct: 683 GSVSKKTDILVAG---------------------PGAGSKLAK----------------- 704

Query: 760 KLKTATDLGIQVMTEDEWLELVAG 783
               AT+LG+Q M EDEWL L+ G
Sbjct: 705 ----ATELGVQTMDEDEWLALIGG 724