Pairwise Alignments

Query, 502 a.a., cell wall degradation protein from Caulobacter crescentus NA1000

Subject, 613 a.a., L,D-transpeptidase YcbB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  176 bits (445), Expect = 3e-48
 Identities = 132/477 (27%), Positives = 213/477 (44%), Gaps = 71/477 (14%)

Query: 81  AMTAFSPDRAIELYMAGDPASRAAGQAQLVS-LTLAYARAVRTGRLPISAFKAEWGLRPA 139
           A+  F P     + +  DPA     +  ++S   + Y   +    +P+   +  +  +P 
Sbjct: 125 AIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMGYLHFI--ANIPVKGQRWLYSNKPY 182

Query: 140 AYDPTP-----EFVAAVQQGRLAEWLETLPPPYTGYQALRTGLA---------------- 178
           A    P     ++  A+++G+L  ++ +L P +  Y  +   L                 
Sbjct: 183 ALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQYAPMHDALLKLVADSRPWPQLTNTA 242

Query: 179 ------------TYRDIAAKGGWLPIAAGPELK--------EGVTGARVVALEARLAAED 218
                         R+I  + G L    GP++           V     V  E  +A ++
Sbjct: 243 TLRPGQWSNDVPALREILQRTGMLD--GGPKIALPGDNTADSAVVSPSAVVDETSVAHDE 300

Query: 219 PTVA----VDAAPVFDAALTQAVQRAQKRFGLNPNGIVDRATLAALNIPVERRIDQIVAN 274
           PT        AA  +D  L +AV+R Q   GL  +G++  AT   LN+   +R   +  N
Sbjct: 301 PTARRSKPAPAARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALN 360

Query: 275 MERWRWLPQTLPAERIQVNVAAAILSVFHHDTPTLTMRAVTGRPGDETPMLSSMIHSIVL 334
           ++R R LP  L +  I VN+ A  L  + +    L  R + GRP  +TPM+SS ++++V+
Sbjct: 361 IQRLRLLPAEL-STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVV 419

Query: 335 NPPWNVPQSIASKEIWPKERASPGYLARN-------------------DFIVIPIEGGGT 375
           NPPWNVP ++A K+I PK    PGYL R+                   D+  I       
Sbjct: 420 NPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPF 479

Query: 376 RLQQKAGPLAALGKVKFDFNNPYGVYLHDTPSRSRFDSFSRLASHGCVRLQKPIELVNEV 435
           R QQ  G   +LG+ KF+  +   +YLHDTP+ + F   +R  S GCVR+ K  EL N +
Sbjct: 480 RFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANML 539

Query: 436 MRDDPTWTPEKVNETLASGETVRAKLPQQIAVYLLYWTAYVTPDGQVNFRQDPYGWD 492
           ++ D  W   +++  L  G+T    + Q I V L Y TA+V  DG++ +R D Y +D
Sbjct: 540 LQ-DAGWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 595