Pairwise Alignments

Query, 288 a.a., cytochrome cbb3 oxidase, diheme subunit, membrane-bound ccoP from Caulobacter crescentus NA1000

Subject, 313 a.a., cytochrome c oxidase subunit, cbb3-type from Pseudomonas putida KT2440

 Score =  167 bits (423), Expect = 3e-46
 Identities = 103/280 (36%), Positives = 148/280 (52%), Gaps = 26/280 (9%)

Query: 13  ETTGHEWDGIRELDNPLPRWWLWIWYATIAFSIGYWVLMPA---WPG-LNGYTKGLLNKS 68
           ET GH +DGI E DNPLP+WW W++  T+AFS+GY +L P    W G L GY  G    +
Sbjct: 38  ETMGHSFDGIEEYDNPLPKWWFWLFVGTLAFSVGYLILYPGLGNWKGILPGYENGWTGAN 97

Query: 69  DRAEVGQELKALEAHRGEGAAMLRTASLEQIEKDPKLQAYAQQVGQSVFGDNCATCHGIG 128
              E  +E+   +A  G   A      +E++ KDP+    A ++G  +F  NC+ CHG  
Sbjct: 98  ---EWQKEMDKADARFGPIFAKYAAMPVEEVAKDPQ----ALKMGSRLFASNCSVCHGSD 150

Query: 129 GTGSKGYANLRDDVWLWGGKLEDIQYTITHGIRSGAEGARVSQMPAYGRDEMLKPEQIDD 188
             G+ G+ NL D+ W WGG  E    TI   I SG  G     MPA+   E++  + + D
Sbjct: 151 AKGAFGFPNLTDNDWRWGGDPE----TIKTSIMSGRHGV----MPAWA--EVIGDQGVAD 200

Query: 189 LTEYVVN-LSRR--PANAAA-VARATPLFEAQCSACHGPQGQGNQQLGAPNLTDAD-WLF 243
           +  +VV+ L  R  P  A A V     +F A C ACHGP+G+G   +GAPNLT    +++
Sbjct: 201 VAAFVVSKLDGRTLPEGAKADVENGQKIFAANCVACHGPEGKGTPAMGAPNLTHPQAFIY 260

Query: 244 GADRASIRGQIYAGNGGVMPAWSGRLSPETIKALTVYIHS 283
           G+  A ++  I  G  G MPA +     + +  L  Y++S
Sbjct: 261 GSSFAQLQQTIRYGRQGQMPAQAEIQGNDKVHLLAAYVYS 300



 Score = 64.7 bits (156), Expect = 2e-15
 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 13/157 (8%)

Query: 132 SKGYANLRDDVWLWGGKLEDIQYTITHGIRSGAEGARVSQMPAYGRDEMLKPEQIDDLTE 191
           S GY  L   +  W G        I  G  +G  GA   Q      D    P        
Sbjct: 69  SVGYLILYPGLGNWKG--------ILPGYENGWTGANEWQKEMDKADARFGPIFAKYAAM 120

Query: 192 YVVNLSRRPANAAAVARATPLFEAQCSACHGPQGQGNQQLGAPNLTDADWLFGADRASIR 251
            V  +++ P    A+   + LF + CS CHG   +G    G PNLTD DW +G D  +I+
Sbjct: 121 PVEEVAKDPQ---ALKMGSRLFASNCSVCHGSDAKG--AFGFPNLTDNDWRWGGDPETIK 175

Query: 252 GQIYAGNGGVMPAWSGRLSPETIKALTVYIHSNAGGQ 288
             I +G  GVMPAW+  +  + +  +  ++ S   G+
Sbjct: 176 TSIMSGRHGVMPAWAEVIGDQGVADVAAFVVSKLDGR 212