Pairwise Alignments

Query, 288 a.a., cytochrome cbb3 oxidase, diheme subunit, membrane-bound ccoP from Caulobacter crescentus NA1000

Subject, 632 a.a., hypothetical protein from Pseudomonas sp. RS175

 Score = 47.4 bits (111), Expect = 8e-10
 Identities = 55/195 (28%), Positives = 82/195 (42%), Gaps = 42/195 (21%)

Query: 57  LNGYTKGLLNKSDRAEVGQELKALE---AHRGEGAAMLRTAS--------LEQIEKDPKL 105
           L G    L  K ++AE+ Q + AL    + R +GA + R A           ++ + P +
Sbjct: 70  LEGLVVALPAKPEKAELTQGIGALRNAISQRQDGAEVARMARQMGARLAVAYEVSQAPVI 129

Query: 106 QAYAQQVGQSVFGDNCATCHGIGGTG--------SKGYANLRDDVWLWGGKLEDIQ-YTI 156
                + G  ++  NC+ CHG  G G            ANLRD       +L+++  Y I
Sbjct: 130 TPDPAR-GAPLYAQNCSVCHGDSGAGDGPAGVGLEPPPANLRD-----SKRLDNLSLYAI 183

Query: 157 THGIRSGAEGARVSQMPAYGRDEMLKPEQIDDLTEYVVNLSRRPA--------NAAAVAR 208
              +  G EG   + MPA+   + L   Q  DL  Y+ + S  PA        N A +AR
Sbjct: 184 YSTLGLGVEG---TDMPAFA--DQLDDRQRWDLATYIASFSADPAAAKGEQTFNLADLAR 238

Query: 209 ATPLFEAQCSACHGP 223
            TP   A+  A  GP
Sbjct: 239 QTP---AEVLATQGP 250



 Score = 38.5 bits (88), Expect = 4e-07
 Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 196 LSRRPANAAAVARATPLFEAQCSACHGPQGQGNQQLGA------PNLTDADWLFGADRAS 249
           +S+ P      AR  PL+   CS CHG  G G+   G        NL D+  L      +
Sbjct: 123 VSQAPVITPDPARGAPLYAQNCSVCHGDSGAGDGPAGVGLEPPPANLRDSKRLDNLSLYA 182

Query: 250 IRGQIYAG-NGGVMPAWSGRLSPETIKALTVYIHS 283
           I   +  G  G  MPA++ +L       L  YI S
Sbjct: 183 IYSTLGLGVEGTDMPAFADQLDDRQRWDLATYIAS 217