Pairwise Alignments

Query, 606 a.a., single-stranded-DNA-specific exonuclease recJ from Caulobacter crescentus NA1000

Subject, 569 a.a., ssDNA-specific exonuclease RecJ from Pseudomonas putida KT2440

 Score =  251 bits (641), Expect = 6e-71
 Identities = 199/576 (34%), Positives = 288/576 (50%), Gaps = 51/576 (8%)

Query: 49  LAKALVSRGVTLEHAEHYLRPTLKALFPDPSLFTDMDRAAEILIDALERGRPTMVFADYD 108
           L +   +RGV    +E  L  +L  L P   L   ++   ++L++A+++ +  ++  D+D
Sbjct: 22  LTRLYAARGV---QSEAELDKSLARLLPYQQL-KGIEAGVDLLVEAIDQRQRILIVGDFD 77

Query: 109 VDGATSAAQLVRWFRHMGVELPIY-IPDRLTEGYGPSPAAFRKIRDGGAELVVTLDCGAA 167
            DGAT++   V   R +G     Y +P+R   GYG +P           +L++T+D G +
Sbjct: 78  ADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITVDNGIS 137

Query: 168 AYDAIASAGEIGLEVVVIDHHLMREDPPAAAAVVNPNRPGCPSGQGVLAAAGVTFVLLTA 227
           + D +A+A   GL+V+V DHHL  E  P A A++NPN+PGC      LA  GV F +L A
Sbjct: 138 SVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCSFPSKSLAGVGVIFYVLMA 197

Query: 228 LNREARKRGLFTEDRPQPDPRQWLDLVALGEVCDVTQLVGFNRALTALGL-RAMGAWANP 286
           L    R  G + E +PQP+  + LDLVALG V DV  L   NR L   GL R     A P
Sbjct: 198 LRARLRSLGRY-EAQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRARP 256

Query: 287 GLKALFEVGKGSGEPSVFT-AGFILGPRINAGGRVGRSDLGARLLSTDDPLEARALAEEL 345
           GLKA+ EV +        T  GFILGPR+NA GR+    LG   L  +D   A+ +A++L
Sbjct: 257 GLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALAQDMAQQL 316

Query: 346 DSLNTERKAVEAAVVEEAAAMLERGSNFNPDAPV------IVVAGDDWHPGVIGIVAGRL 399
           D LN +RK++E  +  EA A L+       D PV      + +   DWH GVIGI+A RL
Sbjct: 317 DDLNQDRKSIEQGMQREALAQLK-------DLPVESMPYGLCLFDADWHQGVIGILASRL 369

Query: 400 RERYRKPVVVIGIDRAANVGKGSGRSQSGVNLGRAIQ--AAFEAGLLMAGGGHAMAAGLS 457
           +ERY +P +    D    + KGS RS  G ++  A+   AA    L+   GGHAMAAGLS
Sbjct: 370 KERYHRPTIAFA-DAGDGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLS 428

Query: 458 IRPEMIPEF---------RAFLEERLAGEMEAVGVEAVEVDALVQPRAANRALLDDFQRL 508
           +       F         R   EE L G + + G  AVE   L   +A   A        
Sbjct: 429 LPEANFSAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHA-------- 480

Query: 509 APFGPGNPEPLF-ALSQVRPERVSALKGGHVRMDLVGPTGD-RIKAISWRSAETPLGQRL 566
            P+G   PEPLF  + Q+  +RV   +  H+++ L    G  R+  I++           
Sbjct: 481 GPWGQHFPEPLFHGVFQLVEQRVVGER--HLKVVLKSECGSVRLDGIAFGIDREVWPNPT 538

Query: 567 LAGGGPLDVVGKLKPDDYMGRNGVQLEIEDAH-DPR 601
           +     +++  KL  +++ G   VQL I  AH +PR
Sbjct: 539 VRW---VELAYKLDVNEFRGNESVQLMI--AHMEPR 569