Pairwise Alignments

Query, 606 a.a., single-stranded-DNA-specific exonuclease recJ from Caulobacter crescentus NA1000

Subject, 578 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  273 bits (699), Expect = 1e-77
 Identities = 203/577 (35%), Positives = 298/577 (51%), Gaps = 37/577 (6%)

Query: 41  QRHGLIEPLAKALVSRGVTLEHAEHYLRPTLKALFPDPSLFTDMDRAAEILIDALERGRP 100
           ++ GL   LA+   +RG+T   ++  L   L  L P  S+    D AA  L DA+   + 
Sbjct: 17  EQSGLHPLLARLFAARGIT---SKDELDDALARLLPPSSMLGAQD-AARALADAMAAQKN 72

Query: 101 TMVFADYDVDGATSAAQLVRWFRHMGVELPI-----YIPDRLTEGYGPSPAAFRKIRDGG 155
             + ADYD DGAT+ A  +R  R +G  L        +PDR+T+GYG +P+   +++  G
Sbjct: 73  ICIVADYDCDGATACAVGLRGLRLLGAPLGFDRVNYLVPDRVTDGYGLTPSIATRVKAQG 132

Query: 156 AELVVTLDCGAAAYDAIASAGEIGLEVVVIDHHLMREDP-----PAAAAVVNPNRPGCPS 210
           A+++VT+D G A+ D + +A E+GL V+V DHHL          P    +VNPN+PGCP 
Sbjct: 133 ADVLVTVDNGIASVDGVRAARELGLAVIVTDHHLPALKNGEIALPQDCIIVNPNQPGCPF 192

Query: 211 GQGVLAAAGVTFVLLTALNREARKRGLFTEDRPQPDPRQWLDLVALGEVCDVTQLVGFNR 270
               +A  GV F +L AL  E R+RG+FT    QP     L LVALG V DV +L   NR
Sbjct: 193 ESKSIAGVGVMFYVLLALRAELRERGVFTAQN-QPKIDTLLPLVALGTVADVVKLDANNR 251

Query: 271 ALTALGLRAMGAWANP-GLKALFEVG-KGSGEPSVFTAGFILGPRINAGGRVGRSDLGAR 328
            L A GL+ + A A P G+ ALF    +     + F  GF LGPR+NA GR+    LG  
Sbjct: 252 RLVAQGLKRVRAGAMPPGMVALFNAAARKPAAATGFDFGFALGPRLNAAGRLADMTLGIE 311

Query: 329 LLSTDDPLEARALAEELDSLNTERKAVEAAVVEEAAAMLERGSNFNPD-APVIVVAGDDW 387
            L+TDD L A  LA  LD +N ERKA+E  + E+A  M E   + + +  P +VV   D+
Sbjct: 312 CLTTDDGLRADELARTLDGINRERKAIEGDMREQALQMAEEMFDESEEPPPALVVFDPDF 371

Query: 388 HPGVIGIVAGRLRERYRKPVVVI---GIDRAANVGKGSGRSQSGVNLGRAIQ--AAFEAG 442
           H GV+GIVA RL+++  +P  V    G +   +  KGSGRS +G +L  A+   A    G
Sbjct: 372 HEGVVGIVASRLKDKLHRPTFVFAASGAEGKEHELKGSGRSIAGFHLRDALDLVAKRHPG 431

Query: 443 LLMAGGGHAMAAGLSIRPEMIPEFRAFLEERLAGEMEAVGVE-AVEVDALVQPRAANRAL 501
           +L+  GGHAMAAG +I  E +  F A L++     ++A  ++  +E D  +  +     L
Sbjct: 432 VLLRFGGHAMAAGCTIDEEQLETFEAALQQVAHEWLDAATLQRRMEADGPLDTKYRRADL 491

Query: 502 LDDFQRLAPFGPGNPEPLFALS-QVRPERVSALKGGHVRMDLVGPTGDRIKAISWRSAET 560
           +D   +   +G G   P+F     V  +R+   K   +++   G   D I    W     
Sbjct: 492 VDTLHQ-EVWGQGFAPPVFCEEVVVVSQRLVGEKHLALKLKHQGEPVDGI----WFGHTE 546

Query: 561 PLGQRLLAGGGPLDVVGKLKPDDYMGRNGVQLEIEDA 597
           PL  R       + +  +L  D++ G+  V+  +E A
Sbjct: 547 PLPAR-------VKIAFRLDADEWQGQRRVRFLVEAA 576