Pairwise Alignments

Query, 606 a.a., single-stranded-DNA-specific exonuclease recJ from Caulobacter crescentus NA1000

Subject, 577 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  251 bits (642), Expect = 5e-71
 Identities = 196/587 (33%), Positives = 294/587 (50%), Gaps = 32/587 (5%)

Query: 24  RAWRERPADLAVVREIQQRHGLIEPLAKAL-VSRGVTLEHAEHYLRPTLKALFPDPSLFT 82
           R  R R AD     E  +    + PL + L  SRGV    +   L  ++K + P   L +
Sbjct: 5   RQLRRREAD-----ETAELPADLPPLLRRLYASRGV---RSARELERSVKGMLPWQQL-S 55

Query: 83  DMDRAAEILIDALERGRPTMVFADYDVDGATSAAQLVRWFRHMGVELPIY-IPDRLTEGY 141
            +D A EIL +A   G   +V  D+D DGATS A  V   R +G +   Y +P+R  +GY
Sbjct: 56  GIDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGY 115

Query: 142 GPSPAAFRKIRDGGAELVVTLDCGAAAYDAIASAGEIGLEVVVIDHHLMREDPPAAAAVV 201
           G SP    + +  GA+L+VT+D G +++  +A A  +G+ V+V DHHL  +  P A A++
Sbjct: 116 GLSPEVVDQAKARGAQLIVTVDNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAII 175

Query: 202 NPNRPGCPSGQGVLAAAGVTFVLLTALNREARKRGLFTE-DRPQPDPRQWLDLVALGEVC 260
           NPN   C      LA  GV F L+ AL    R +G F E +   P+  + LDLVALG V 
Sbjct: 176 NPNLRDCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVA 235

Query: 261 DVTQLVGFNRALTALGL-RAMGAWANPGLKALFEVGKGSGEPSVFTA---GFILGPRINA 316
           DV  L   NR LT  GL R       PG+KAL E+   + +P    A   GF LGPR+NA
Sbjct: 236 DVVPLDANNRILTWQGLSRIRAGKCRPGIKALLEI--SNRDPQQLAASDLGFALGPRLNA 293

Query: 317 GGRVGRSDLGARLLSTDDPLEARALAEELDSLNTERKAVEAAVVEEAAAM---LERGSNF 373
            GR+    +G  LL  D+  EAR LA ELD+LN  RK +E  +  EA  +   LER S  
Sbjct: 294 AGRLDDMSVGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSET 353

Query: 374 NPDAPVIVVAGDDWHPGVIGIVAGRLRERYRKPVVVIGIDRAANVGKGSGRSQSGVNLGR 433
            P    + +   +WH GV+GI+A R++ER+ +PV+           KGSGRS  G+++  
Sbjct: 354 LPGG--LAMYHPEWHQGVVGILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRD 410

Query: 434 AIQA--AFEAGLLMAGGGHAMAAGLSIRPEMIPEFRAFLEERLAGEMEAVGVEA-VEVDA 490
           A++        L++  GGHAMAAGLS+      +F+    E +   ++   ++  V  D 
Sbjct: 411 ALERLDTLYPDLMIKFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDG 470

Query: 491 LVQPRAANRALLDDFQRLAPFGPGNPEPLF-ALSQVRPERVSALKGGHVRMDLVGPTGDR 549
            +     +  +    +   P+G   PEPLF    ++  +R+   +   V ++ VG  G  
Sbjct: 471 PLSAAEMSMEVAQLLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVG-GGPL 529

Query: 550 IKAISWRSAETPLGQRLLAGGGPLDVVGKLKPDDYMGRNGVQLEIED 596
           +  I++    T        G   +++  KL  +++ G   +Q+ I+D
Sbjct: 530 LDGIAFNIDTTCWPDN---GVREVELAYKLDINEFRGNRSLQIIIDD 573