Pairwise Alignments

Query, 338 a.a., DNA-directed RNA polymerase alpha chain from Caulobacter crescentus NA1000

Subject, 328 a.a., DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  324 bits (831), Expect = 2e-93
 Identities = 170/326 (52%), Positives = 225/326 (69%), Gaps = 6/326 (1%)

Query: 7   NELIRPEKPQIETGADATRKARIVAEPLERGFGVTLGNALRRVLLSSLQGAAVTAIQIDG 66
           N L++P+   +E  +  T +A++  EP ERG+G TLGNALRRVLLSS+ G A T + I G
Sbjct: 3   NNLLKPKTINVEQVS--TNRAKVTLEPFERGYGHTLGNALRRVLLSSMTGHAPTEVTIAG 60

Query: 67  VVHEFSSLEGVREDVVDIVLNIKQLAVRMHAEGPKRMTLRATGPGPVTAGQIETPADIEI 126
           VVHE+SS++GV+EDVV+++LN+K +  ++H      ++LR  G G VTA  I+TP D+EI
Sbjct: 61  VVHEYSSIDGVQEDVVNMLLNLKGVVFKLHNRDEVTLSLRKDGEGVVTAADIQTPHDVEI 120

Query: 127 LNPDHVLCTLDDGASVRMEFTVNNGKGYVPAD--RNRPEDAPIGLIAVDALYSPVKRVAY 184
           +NP H + TL  GA + M+  V  G+GYVP    RN  +   IG I +DA +SPVKRV+Y
Sbjct: 121 VNPGHAIATLSAGAKLDMQIKVEKGRGYVPGSLRRNDDQTRSIGRIVLDASFSPVKRVSY 180

Query: 185 RVEPTRQGQSLDYDKLILEVETNGAVTPVDAVAYAARILQDQLQIFITFE--EPKAKSAD 242
            VE  R  Q  D DKL+LE+ETNG++ P +AV  +A+IL +QL +F   E  E  A  A 
Sbjct: 181 TVESARVEQRTDLDKLVLEIETNGSIGPEEAVRASAKILVEQLAVFAQLEGVELSAFDAP 240

Query: 243 ESKPELPFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLN 302
             +    F+P LL+ VDELEL+VRSANCLK +NI YIGDLIQ+TE E+L+TPN GRKSLN
Sbjct: 241 AQRSSQQFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLN 300

Query: 303 EIKEVLAGMGLHLGMDVPNWPPENIE 328
           EIKEVLA  GL LGM + NWPP  ++
Sbjct: 301 EIKEVLASRGLTLGMKLENWPPAGLD 326