Pairwise Alignments

Query, 338 a.a., DNA-directed RNA polymerase alpha chain from Caulobacter crescentus NA1000

Subject, 329 a.a., RNA polymerase, alpha subunit from Escherichia coli BL21

 Score =  327 bits (837), Expect = 3e-94
 Identities = 168/326 (51%), Positives = 226/326 (69%), Gaps = 8/326 (2%)

Query: 8   ELIRPEKPQIETGADATRKARIVAEPLERGFGVTLGNALRRVLLSSLQGAAVTAIQIDGV 67
           E ++P    IE  +     A++  EPLERGFG TLGNALRR+LLSS+ G AVT ++IDGV
Sbjct: 7   EFLKPRLVDIEQVSST--HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64

Query: 68  VHEFSSLEGVREDVVDIVLNIKQLAVRMHAEGPKRMTLRATGPGPVTAGQIETPADIEIL 127
           +HE+S+ EGV+ED+++I+LN+K LAVR+  +    +TL  +G GPVTA  I    D+EI+
Sbjct: 65  LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124

Query: 128 NPDHVLCTL-DDGASVRMEFTVNNGKGYVPAD---RNRPEDAPIGLIAVDALYSPVKRVA 183
            P HV+C L D+ AS+ M   V  G+GYVPA     +  ++ PIG + VDA YSPV+R+A
Sbjct: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184

Query: 184 YRVEPTRQGQSLDYDKLILEVETNGAVTPVDAVAYAARILQDQLQIFITFEEPKAKSADE 243
           Y VE  R  Q  D DKL++E+ETNG + P +A+  AA IL +QL+ F+   + +     E
Sbjct: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244

Query: 244 SKPELPFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNE 303
            KPE  F+P LL+ VD+LEL+VRSANCLK + I YIGDL+Q+TE E+L+TPN G+KSL E
Sbjct: 245 EKPE--FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302

Query: 304 IKEVLAGMGLHLGMDVPNWPPENIED 329
           IK+VLA  GL LGM + NWPP +I D
Sbjct: 303 IKDVLASRGLSLGMRLENWPPASIAD 328