Pairwise Alignments

Query, 550 a.a., transporter, major facilitator superfamily from Caulobacter crescentus NA1000

Subject, 436 a.a., Permeases of the major facilitator superfamily from Pseudomonas fluorescens GW456-L13

 Score =  222 bits (566), Expect = 2e-62
 Identities = 135/355 (38%), Positives = 202/355 (56%), Gaps = 11/355 (3%)

Query: 10  AKGRDTMVVGASSLGTVFEWYDFYLYGSLAPIITSH-FFSGVNETTGFILALLAFAAGFA 68
           A  +      A+ +GT+ EWYDFY+Y + A ++    FF   ++    + A   FA GF 
Sbjct: 5   ASSQPRRAAAAAFIGTMIEWYDFYIYATAAALVFGALFFPSDDKLFSTMAAFGTFAVGFF 64

Query: 69  IRPLGALIFGRLGDLWGRKNTFLITMLLMGVSTFVVGLLPSYAQIGVAAPIALVLMRLVQ 128
            RPLG ++FG +GD  GRK + +IT+L+MGV T  +GLLP+YAQIG AAP+ L+L+R+VQ
Sbjct: 65  ARPLGGIVFGHIGDRIGRKKSLIITLLMMGVVTVCIGLLPTYAQIGAAAPVLLILLRIVQ 124

Query: 129 GLALGGEYGGAATYVAEHAPPGKRGFYTSWIQTTATIGLFLSLAVILVARIQLGEEAFKA 188
           G+A+GGE+GGA     EHAP G+R F+ S+ Q  +  GL LSL +   A  +L EE   +
Sbjct: 125 GIAVGGEWGGAVLMAGEHAPKGRRNFFASFAQLGSPAGLILSL-LAFSAVTRLPEEDLMS 183

Query: 189 WGWRIPFLVSLLLLGVSLWIRLKLHESPTF--ERMIAEGKGSKK--PLTEAFGN-WPNLK 243
           WGWR+PFL S LLL V L IRL ++ESP F   R +A     K+  P+ E     W   +
Sbjct: 184 WGWRLPFLASSLLLLVGLAIRLGVNESPEFLASRELASKNKRKEQAPVMEVLRTAW---R 240

Query: 244 IVLLALVGLTMGQAVVWYTGQFYALFFLEKTLKLDGALANTLVAVALLIGTPFFVICGWL 303
            +LL +   T+G A V++T  F  + +  + L+L  +L    + V  +I      +  W+
Sbjct: 241 PLLLCIGANTLGIAGVYFTNTF-MIAYTTQQLELPRSLILECLFVVAIIQFCIQPLAAWV 299

Query: 304 SDKIGRKPIIILGCLLAALTYFPIFKAITTYANPALAKAEATAPVVVTADTATCA 358
           ++KIG    + L  LLA  + +P+F  +++   P +    A A V + +  A  A
Sbjct: 300 AEKIGATRFLCLVSLLAMASPYPMFVLVSSAQAPLIILGIALAVVCMASFYAVIA 354



 Score = 47.4 bits (111), Expect = 1e-09
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 437 AAGYPAKADAALVNKPAVIGLLALLVIYVTMVYGPIAAMLVELFPTRIRYTAMSLPYHIG 496
           A+ YP     +    P +I  +AL V+ +   Y  IA  +  +F TR+RYTA+SL Y I 
Sbjct: 318 ASPYPMFVLVSSAQAPLIILGIALAVVCMASFYAVIAGYVSGMFETRVRYTAISLAYQIC 377

Query: 497 NGWFGGFLPTTAFAIVAATGDIYSGLWYPVII 528
               GG  P     I       + G W+P+ +
Sbjct: 378 GAVAGGLTP----LIGTLLAHRFVGQWWPMAV 405