Pairwise Alignments

Query, 550 a.a., transporter, major facilitator superfamily from Caulobacter crescentus NA1000

Subject, 500 a.a., Proline/betaine transporter from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  211 bits (537), Expect = 5e-59
 Identities = 118/333 (35%), Positives = 186/333 (55%), Gaps = 16/333 (4%)

Query: 12  GRDTMVVGASSLGTVFEWYDFYLYGSLAPIITSHFFSGVNETTGFILALLAFAAGFAIRP 71
           G+    + A+SLG   EW+DF +YG +A  +   FF G + +   + AL  F+  F IRP
Sbjct: 21  GKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRP 80

Query: 72  LGALIFGRLGDLWGRKNTFLITMLLMGVSTFVVGLLPSYAQIGVAAPIALVLMRLVQGLA 131
           LG L FG LGD +GR+    IT+++M +STF +GL+PSY  IG+ API L++ ++ QG +
Sbjct: 81  LGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFS 140

Query: 132 LGGEYGGAATYVAEHAPPGKRGFYTSWIQTTATIGLFLSLAVILVARIQLGEEAFKAWGW 191
           +GGEY GA+ +VAE++P  KRGF  SW+   +  G  L   V+++    +GE  F  WGW
Sbjct: 141 VGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGW 200

Query: 192 RIPFLVSLLLLGVSLWIRLKLHESPTFERMIAE-GKGSKKPLTE---------AFGNWPN 241
           RIPF ++L L  + L++R  L E+P F++ + +  +G ++ L +         A  +W +
Sbjct: 201 RIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRS 260

Query: 242 LKIVLLALVGLTMGQAVVWYTGQFYALFFLEKTLKLDGALANTLVAVALLIGTPFF-VIC 300
               LL  +GL +   V +Y    Y   +L   L         L+ +A++IG  F   + 
Sbjct: 261 ----LLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSED-HGVLIIIAIMIGMLFVQPVM 315

Query: 301 GWLSDKIGRKPIIILGCLLAALTYFPIFKAITT 333
           G LSD+ GR+P ++LG +   +   P F  I +
Sbjct: 316 GLLSDRFGRRPFVLLGSVALFVLAIPAFILINS 348



 Score = 45.1 bits (105), Expect = 7e-09
 Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 6/100 (6%)

Query: 454 VIGL----LALLVIYVTMVYGPIAAMLVELFPTRIRYTAMSLPYHIGNGWFGGFLPTTAF 509
           VIGL    L +L + +    G +A+ L  +FPT IRY+A++  ++I +    G  PT A 
Sbjct: 350 VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNI-SVLVAGLTPTLAA 408

Query: 510 AIVAATGDIYSGLWYPVIIAAITAVVGGLFLKDTRHNRLE 549
            +V ++ ++    +Y +++A I  ++ G+ +K+T +  L+
Sbjct: 409 WLVESSQNLMMPAYYLMVVAVI-GLITGVTMKETANRPLK 447